LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi168g00083	ATGATTGGCAGGTCTTTTACAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAGCGATAATCGTTTTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATCTCGAAGGTTTTGTCTGTGACGTTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATTGAAGTTGGGGGGAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGATATATAAAACCCGGACCAGATGCCAGCCATGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGTTACAAGAATTTTTGAAACCTAGTTTGCGCATTGTATCTGGAAAAAGCAATCTATCAAGTTCTTCCAAAAGTTTCATGGACAGTTTTAAAAGTACAAGTTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATTGTGAAGGTGAAAGTGATTCAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTATTTTGAACCTCGGCCAACAGACTGTCCAGACAACTGTAGTGAGGAGTAACTTGAATCCCGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGCCACTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTGAAATCTGATGACAATGCACTTGTTGAGGATAGTCCAGTCAATATCATTGATGGTAAGGTTAAACAAATGATTTCACTCAAGCTCCAGAATGTTGAATCTGGAGAAATGGAGCTAGAACTTGAGTGGATTCCTCTTGATCAATAG	963	0.3915	MIGRSFTGRRRLKDLLLQSDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYIKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSNLSSSSKSFMDSFKSTSSQRMEGMVEFIGIVKVKVIQGTNLAIRDIKSSDPYVILNLGQQTVQTTVVRSNLNPVWNEEHMLSVPEHYGQLKLKVFDHDTFSADDIMGEADIDLQPLITSAMAFGDAGMFGDMQIGKWLKSDDNALVEDSPVNIIDGKVKQMISLKLQNVESGEMELELEWIPLDQ	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi168g00083	320	CDD	ArfGap	12	118	-	-
	Sebi168g00083	320	SMART	arf_gap_3	9	131	IPR001164	GO:0005096
	Sebi168g00083	320	Pfam	Putative GTPase activating protein for Arf	10	125	IPR001164	GO:0005096
	Sebi168g00083	320	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	162	320	-	-
	Sebi168g00083	320	Pfam	C2 domain	164	254	IPR000008	-
	Sebi168g00083	320	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Sebi168g00083	320	PRINTS	HIV Rev interacting protein signature	21	40	IPR001164	GO:0005096
	Sebi168g00083	320	PRINTS	HIV Rev interacting protein signature	40	57	IPR001164	GO:0005096
	Sebi168g00083	320	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	9	123	IPR001164	GO:0005096
	Sebi168g00083	320	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	126	IPR037278	-
	Sebi168g00083	320	SMART	C2_3c	165	260	IPR000008	-
	Sebi168g00083	320	FunFam	Arf-GAP with dual PH domain-containing protein 1	4	132	-	-
	Sebi168g00083	320	ProSiteProfiles	C2 domain profile.	146	261	IPR000008	-
	Sebi168g00083	320	Gene3D	C2 domain	162	320	IPR035892	-
	Sebi168g00083	320	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	164	313	IPR035892	-
	Sebi168g00083	320	CDD	C2_ArfGAP	163	307	-	-
	Sebi168g00083	320	Gene3D	Arf GTPase activating protein	4	129	IPR038508	-
	Sebi168g00083	320	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	9	320	IPR044518	GO:0005096\|GO:0005543

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi168g00083	Sebi-Chr168	1188519	1191891	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi168g00083	2	320	C2H2 Transcription Factor Family	AT4G21160	73.939	0.0	511

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi168g00083	K12486		-	gmx:100810806	557.755