Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi168g00080 ATGGCCCCTGATAGCAATGTCACCCTCAGCTCCCCTGGTGTTGTTGCTTCCACTTCTGCATTAAGTGCCAGTTCAAACTATGATCCCCTCTACAAAACAGCCAGGATTTTCACAGCTTCTCTAAATTACACAATCAAAGGAGTTCAAGGAAACTATTTTGTTAGGTTCCATTTCTGCCCCTTTGAGACTAATGACTATAATGTAAATGAGTCCTCATTTGGTGTTGTGGTCAATGGTTTGAAACTATTGTCTGAGTTTGATGTTCCAGGTAAGATATCCCACAAGAATATGAACTTGCAAAGTTCAGGAAAGAATTCCAGTTCATTCTTCTTGATTAAAGAGTATATTCTGGCTGTTGATGCTGATATGCTTGTGATTGAGTTTGTTCCAACTGGAAGCTCATTTGGCTTCATCAATGCCATTGAGATTGTCCCAGTTGTAGGTGAGCTTTTTAGTGGCTCAGTCAGTAAAGTTGGTGGAAGTGGTGGAAGCATAAATTTGAATGGACGTGAGATGGAGACTATGTATAGGTTAAATGTTGGTGGGCCTGAGATTGAATCCAATGAGGATCCAAATCTTTGGAGAACCTGGGAAGTGGATTCTAGCTATATGATCACAGAAAATGCTGGTTCAGCAATTAAGAACAGCTCTAATATTACATATGCTTCCATGAATGATACTTCAGTGGCTCCTCTCCTTGTGTATGAAACTGCAAGGGCAATGTCTAACACTCAAGTCTTGGACAAAAGATTTAACATGTCATGGAAATTTGAAGTAGATCCCGATTTTGATTATTTGGTCCGATTGCATTTCTGTGAGCTGATGTATGATAAGTCAAATGAGAGAATATTCAGGATCTACATAAACAACAGGACAGCTGCAGATAATTTTGATATTTTTGTACGAGCTGGAGGGATGAATAAAGCATATCACCAGGATCATTTTGATTCTGCATCATCAAGGATTGACACACTTTGGGTTCAACTGGGTCCTGATACAGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTAGAGATTTTCAAGCTTAGTCGAAATGGTAATCTTGCCTATGTAGAGAGATATAACTCAGCTGACAATTCAGTAAGCAAATCAAAAGCAAGAATTTGGGTTGGAATTGGAGCAGGTCTAGCTTCTGTAGCTGTAATTGCATGTATAGTTGTTCTTGTTTTCTGTTTCTGCAGAAGGAGGAAGAAAGAATCAAATGATACCAAAAACAACTCTCCGGGTTGGCGACCATTGTTCCTGTATGGAGGGGCTGCTGTAAACAGTACTGTTGGTGCCAAGGGATCAGCAGGTACTCAGAAGTTATATGGATCTGTGGCCTCAACCAGAGTTGGCAAGCGGTTTACATTGGCAGAAATTACTGCTGCAACAAATAACTTTGATGACAGTTTGGTGATTGGAGTTGGAGGCTTTGGTAAGGTGTATAAGGGGGAGATTGAGGATGGTGTCCCTGCTGCAATTAAGCGTGCCAACCCGCAATCTGAGCAAGGTCTGGCTGAATTTGAGACAGAAATTGAGATGCTCTCCAAACTCAGACATAGGCATCTGGTGTCCTTGATTGCTGTGATTAATCCCACCTTGCCTAAAGATCAGATCAACCTTGCAGAATGGGCAATGAGATGGCAAAGGCAAAGATCACTTGACAAAATTATTGATCCACATCTTAAAGGAAATTATTGTCCAGAATCTTTGTCTAAGTTTGGGGAGATAGCAGAGAAATGTCTAGCTGATGATGGGAAGAGCCGCCCCACCATGGGGGAGGTGTTATGGCACTTGGAGTATGTCTTGCAGCTACATGAAGCTTGGCTCAACATGAACAACACTGAAACTTCCTTCTCTAGTAGTCAAGCTATTAGTGGTCCTAAAGATGGAGGACTAGAAGTGATGCAGGAGCCTTCAAGTCAAGATGAAGAGGTTGGTTTAGATCTCAAACAGACAACTGATGGAGGAGGAGACAAAGAAGTGAATGCTGCAATTTGA 2013 0.4173 MAPDSNVTLSSPGVVASTSALSASSNYDPLYKTARIFTASLNYTIKGVQGNYFVRFHFCPFETNDYNVNESSFGVVVNGLKLLSEFDVPGKISHKNMNLQSSGKNSSSFFLIKEYILAVDADMLVIEFVPTGSSFGFINAIEIVPVVGELFSGSVSKVGGSGGSINLNGREMETMYRLNVGGPEIESNEDPNLWRTWEVDSSYMITENAGSAIKNSSNITYASMNDTSVAPLLVYETARAMSNTQVLDKRFNMSWKFEVDPDFDYLVRLHFCELMYDKSNERIFRIYINNRTAADNFDIFVRAGGMNKAYHQDHFDSASSRIDTLWVQLGPDTAAGAAGTDALLNGLEIFKLSRNGNLAYVERYNSADNSVSKSKARIWVGIGAGLASVAVIACIVVLVFCFCRRRKKESNDTKNNSPGWRPLFLYGGAAVNSTVGAKGSAGTQKLYGSVASTRVGKRFTLAEITAATNNFDDSLVIGVGGFGKVYKGEIEDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIAVINPTLPKDQINLAEWAMRWQRQRSLDKIIDPHLKGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNMNNTETSFSSSQAISGPKDGGLEVMQEPSSQDEEVGLDLKQTTDGGGDKEVNAAI 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi168g00080 670 Pfam Malectin-like domain 17 351 IPR024788 -
Sebi168g00080 670 FunFam Receptor-like protein kinase FERONIA 171 354 - -
Sebi168g00080 670 SUPERFAMILY Protein kinase-like (PK-like) 542 612 IPR011009 -
Sebi168g00080 670 SUPERFAMILY Protein kinase-like (PK-like) 449 534 IPR011009 -
Sebi168g00080 670 Gene3D - 170 354 - -
Sebi168g00080 670 Gene3D - 2 146 - -
Sebi168g00080 670 SMART tyrkin_6 471 603 IPR020635 GO:0004713|GO:0006468
Sebi168g00080 670 Gene3D Phosphorylase Kinase; domain 1 447 530 - -
Sebi168g00080 670 Gene3D Transferase(Phosphotransferase) domain 1 531 629 - -
Sebi168g00080 670 FunFam receptor-like protein kinase FERONIA 436 537 - -
Sebi168g00080 670 PANTHER OS03G0124300 PROTEIN-RELATED 4 415 IPR046957 GO:0004672
Sebi168g00080 670 Pfam Protein tyrosine and serine/threonine kinase 476 535 IPR001245 GO:0004672|GO:0006468
Sebi168g00080 670 ProSiteProfiles Protein kinase domain profile. 471 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi168g00080 670 ProSitePatterns Protein kinases ATP-binding region signature. 477 499 IPR017441 GO:0005524
Sebi168g00080 670 MobiDBLite consensus disorder prediction 623 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi168g00080 Sebi-Chr168 1168532 1170958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi168g00080 532 629 Receptor kinase-like Gene Family AT1G30570 76.531 1.17e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi168g00080 Malectin_like 2e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi168g00080 - - gmx:100791403 900.582