Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi168g00071 ATGGATTTTCCAATGGGAGGTGCTGGTGGGTCTGGTGATGAAGACGCCCAAAACTCACACAAGGGAAAAGACCCTCATACAAACGTCTTGATTCCACTCAAACATCCATACTTGAAAAATGAAGCACAACGACGTCAATTAGCCGATGAGGTTGGGCTTGAGCCCAAACAAATTAAGTTTTGGTTTCAGAACAAACGGACTCAAATTAAGGTTCAACATGAGCGAGCAGATAACAATGCTCTTCGAGCTGAGAATGATAGGATGCTTAGCGAAAATCTTCTAATGAAAGAAGCACTAAAGAATACACTCTGCCCAGATTGTGGGGGTCCACCATTTCCTGAAGGGGAGCATGAGCTTTTCATGCAAAAAATGCAACGTGAAAATGCTAAACTAAAAGAAGAGTTTGAGAGGGTGTCTAACCTTCTTGCAAGGTATCTTGAGAAACACATGACAACACATGAGATGCAACAGACTTCCATTCCTATTACAGGACCTTCTTCACATGAGCTAACACTTAATGGAAGTTCAAGTTCATCACTTGGTCAAGGTCTCAACTTGCCCATTAGGGATAATCGTGTATTATTCAACAACTCAATCGAAAGTTCAGATATGGAAAAAGAATTGATGTCTGAGATTGCAACTTCTGCAATGGAAGAACTAGTTAAGCTTATACACATCAATGAGCCCTTATGGGTAATCTCTTCAGCTCAAAAAGAGAAACTCACTCTTCATCGTGAAACTTATGAGAGAATTTTCCCTAAGACTAATCACATGAAAGGTGCCAACGTGCCTCTAGAATCATCAAAAGATTCAGGAATAGTGAACATTAGTGGCAAGGAGCTAGTTGACATTTTTCTAGATGCAGACAAATGGGCAAACCTTTTCCCAGCGATTGTTACAAAAGCGGAAACAATCAAAGTATTTGAAAACGGTTTGTTAGGAAATCGAAGTGGAACCTTACAAATGATGTATGAAAAATTACATGTCCTTTCACATTTAGTGCGACCTCGTGAGTTTTACTTCCTACGTTATTGTCAGCAAGTTGACATTGGGGTGTGGGTGATAGCTGATGTGTCTTTTGACTCCATTCGAGTCAGCTCCCCTCTTTATCGCTCTTGGAGATATCCTTCTGGATGCATGATTCGTGAAATCGCTAATGGGCGTTGCATGGTCACTTGGGTTGAACATGTGGAAGTTGATGATAAATTCATACTCATAGACTATATAGAGATCTTGTTGGTGTCAATGTTGCATATGGAGCGGGAAGATGGATATTGGAACTTCAAAGAATTACTCTATTCACTTGAGGGGAGGAAGAGTGTAATGAAGCTTGCTCATCGAATGGTTAAGACGTTCTGTGAAAGTTTAACCATGTCAGGTCATGAGCTAGATTTTCCACATTTAACAGTGGAAAACAATAGTGGGGTTAGGGTCAATGTTCGTAAGAGCGCAGGTATAGGCCAACCAAATGGTACAATTGTTATGGTTGCTACCTCTCTTTGGCTTCCTCTCCATTACGAGAATGTTTTTGAGTTCCTCACAGATCATAAAAGACGAGCTCAGTGGGATGTTCTTGCTTGTGGAAATCCAGTACATTTGGTTGCACACATTTCAAATGGAATTCATCCGGGAAACTGTATTTCAATTATTCAGCCATTCATCCCTAGTGAGAACAACACCGTGATTCTTCAAGAAAGTTTTATACATCCTATGGGATCATATATTGTATATGCTCCAACAGATGTAGCAGCCATGAATGCGGCCATGAGGGGCGAGGACTCTTCGGTGTTATCAATTCTTCCGTCAGGTTTTGTCATTTGTGCAGATGACCAACCAAAAGTAGATTTGGGAGCAATTGGCAATGGAAATATTGATAGATCAGGAGGCTCATTATTGACTGTGGTTTTCCAAGTAATAGCTAGTAGTCCAGATGGAATCAACCTTTTAAATATGGAATCTGTGGCAACTGTCAACACTCTTTTAACCTCGACGGTTCAAAGAGTAAGGGAAGCTCTAAACTAG 2022 0.4065 MDFPMGGAGGSGDEDAQNSHKGKDPHTNVLIPLKHPYLKNEAQRRQLADEVGLEPKQIKFWFQNKRTQIKVQHERADNNALRAENDRMLSENLLMKEALKNTLCPDCGGPPFPEGEHELFMQKMQRENAKLKEEFERVSNLLARYLEKHMTTHEMQQTSIPITGPSSHELTLNGSSSSSLGQGLNLPIRDNRVLFNNSIESSDMEKELMSEIATSAMEELVKLIHINEPLWVISSAQKEKLTLHRETYERIFPKTNHMKGANVPLESSKDSGIVNISGKELVDIFLDADKWANLFPAIVTKAETIKVFENGLLGNRSGTLQMMYEKLHVLSHLVRPREFYFLRYCQQVDIGVWVIADVSFDSIRVSSPLYRSWRYPSGCMIREIANGRCMVTWVEHVEVDDKFILIDYIEILLVSMLHMEREDGYWNFKELLYSLEGRKSVMKLAHRMVKTFCESLTMSGHELDFPHLTVENNSGVRVNVRKSAGIGQPNGTIVMVATSLWLPLHYENVFEFLTDHKRRAQWDVLACGNPVHLVAHISNGIHPGNCISIIQPFIPSENNTVILQESFIHPMGSYIVYAPTDVAAMNAAMRGEDSSVLSILPSGFVICADDQPKVDLGAIGNGNIDRSGGSLLTVVFQVIASSPDGINLLNMESVATVNTLLTSTVQRVREALN 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi168g00071 673 SUPERFAMILY Bet v1-like 471 669 - -
Sebi168g00071 673 SMART HOX_1 22 76 IPR001356 GO:0003677
Sebi168g00071 673 SMART START_1 211 434 IPR002913 GO:0008289
Sebi168g00071 673 Pfam START domain 212 403 IPR002913 GO:0008289
Sebi168g00071 673 CDD homeodomain 33 73 IPR001356 GO:0003677
Sebi168g00071 673 MobiDBLite consensus disorder prediction 1 29 - -
Sebi168g00071 673 ProSiteProfiles 'Homeobox' domain profile. 40 72 IPR001356 GO:0003677
Sebi168g00071 673 CDD START_ArGLABRA2_like 206 404 - -
Sebi168g00071 673 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 673 IPR042160 -
Sebi168g00071 673 Coils Coil 71 91 - -
Sebi168g00071 673 ProSiteProfiles START domain profile. 202 402 IPR002913 GO:0008289
Sebi168g00071 673 ProSitePatterns 'Homeobox' domain signature. 47 70 IPR017970 GO:0000981|GO:0006355
Sebi168g00071 673 SUPERFAMILY Bet v1-like 203 402 - -
Sebi168g00071 673 Pfam Homeodomain 40 70 IPR001356 GO:0003677
Sebi168g00071 673 Gene3D - 33 78 - -
Sebi168g00071 673 SUPERFAMILY Homeodomain-like 33 80 IPR009057 -
Sebi168g00071 673 Coils Coil 121 148 - -
Sebi168g00071 673 Gene3D - 209 407 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi168g00071 Sebi-Chr168 1028297 1033447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi168g00071 35 673 Homeobox Transcription Factor Family AT1G73360 40.407 4.74e-164 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi168g00071 START 5.5e-29 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi168g00071 K09338 - gmx:100795075 771.541