Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi168g00029 ATGGCAACAGCAGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCTGATGATCCTACGCTTCCACAACCATGGAAAGGGTTGATTGATGGAAGCACTGGTCTGTTATACTATTGGAATCCTGAAACCAATATTACACAATATGAAAAACCGGCTCCCTTGGCACCCCCACCCCTGCCTTCGGGGCCTGCACCAGCGGCTTCTGCGCCGAGTTTGGCACCCATACCGGTGGCTCATACAATGCAGGCTGGAGGAATGGTACAACAGCATGGACAGCAGTTAATGCAAGCGCAGCCCGCCCAACAACAGCAGGTGAATCACCTTTCCCAACAGCATGGCCAATCTATGCCACAGCAGCAGAGTCCCCTTGTCGCACCGGTCACTCAGCAGCAGCCCTCTCAGGCTCAACCTGCACAGCAGCAGAGTTCACAGCTTGCACAGTCAGCGCCGCAGCCTGGTTTACACCAACCCAGACAGCAGATGATGCATCCCCAGGGACAGCAGATGATGCAGCCTCAAGGACAGCAAATTCAGCAAATGCATCATCAGATGCCGCCACAGGCTATCCATTCCCAACATTTTGGGCAAGGAACGTCACAGGATCATGGCTCGCATGGTGTACTACCACAAGCACATCAATTCACTCCCCAGAACATGCATTATATGGCATATCAACAGAACATGATTGCATCCAGGCAACCAAACTCCCAGCAGATTCAGCCAAACATGTTCACATCTGGGCAACCTAACTCCCAGCAGATTCAGCATAACGCACATGGTCAGCCTTTTGAAAACCAACAAGATTATAAAACAGCGTTTCCGAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGGAGTGCTTTACCTGTTCAAAACAGCCAGAACATTCCTGCTGAAGTTAGTTCTGGTCAAGTGCCTAATGTAGGTGTTAATGCTGGCCAACCACAACAATTCAGGGGCTTATCAGGCAGTATGCAACAATCTCCCTCTGCAATGCAGCCGCAGCAGGGTGGTTCTGAGTTATTTTACCAACATGTTCCTAACTTTCAAAACCAAATGAACCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTATTGGCCAAAAAATGGGACATGAGGACAATTCACGTGGCAGAGCTGGGAATGAGTATTACTATAATTCTAACAAAGAGATGCCGACAATGGGTCGTCAACAACCAGATATGACACAAATGCCCGTCTCCAGAAATCAGCAGGATTTGAGGATTGGCAACGCTCCTTTTCAGAATGTAATGCCTAGTGGAAATGGAAGTGGCATTGCTGGGAATGCCATGTCTAGCATGTTCACTCCTCCAATAGGAGGACCTTCACCTCTCTCACCAGCTGAAATATACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCGACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGGTCTTCACGAGTCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTCAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCGCGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCGGCGATCTTCTTGTCAATCCCGTTCAGGTTAACATTGGAAGTGTAGATGAGCTCGCTGCAAATAAAGCTATCACACAGTTACCAATATTATCAATTGGTATTCCATTCTCTGTGACTGTTAATTGCTGTTTTCTCACAGGACTTTTGTTTTGCCATTCAATACCTGATTTAAAGAAGTTGTCTCTTTGGTCATTGCATACATTTGACCTTCGAATTAATTTTGTAAGAGGGCGAGCCTTGGTCAATTATAAGGTTGCTGCTTGTGACCTGGTGTTCATGGGTTCAAATGTTGGAAAAAGCCTCTCTGCTCTTGAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGACGTTTGGAGCAGATCCTCAGATCTCAAGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAGAGATTATGTGATCAACTTGCCCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACAGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGAGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGAAGAACAGGAAGAGCAGGTGCCACTGGTGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGGCAGTTGGCTTTGCGTGGGCCACCAAATTTTGGAAAGGACCGGGCTGGAATGAGCAGGTTTGACTCTGGTGGAGGTGGTGGTGGGCGCTGGGAGTCTGGTGGTCGTGGTGGTGTGAGGGATGGTGGCTTTGGTGGTCGTGGTGGGATGAGAGACGGTGGCTTTGGTGGTCGGGGTGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGCTGGTGGGCAAGGAGGGAGAGATCAACAGGTTTCTGATAAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACTCAAGGGCATTCATCTTTGGGAACTGAACATGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA 3273 0.4754 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNITQYEKPAPLAPPPLPSGPAPAASAPSLAPIPVAHTMQAGGMVQQHGQQLMQAQPAQQQQVNHLSQQHGQSMPQQQSPLVAPVTQQQPSQAQPAQQQSSQLAQSAPQPGLHQPRQQMMHPQGQQMMQPQGQQIQQMHHQMPPQAIHSQHFGQGTSQDHGSHGVLPQAHQFTPQNMHYMAYQQNMIASRQPNSQQIQPNMFTSGQPNSQQIQHNAHGQPFENQQDYKTAFPKVEEAEFKNGSQVGHSPSQYQQRSALPVQNSQNIPAEVSSGQVPNVGVNAGQPQQFRGLSGSMQQSPSAMQPQQGGSELFYQHVPNFQNQMNPGMMHGHPSNVHPIGQKMGHEDNSRGRAGNEYYYNSNKEMPTMGRQQPDMTQMPVSRNQQDLRIGNAPFQNVMPSGNGSGIAGNAMSSMFTPPIGGPSPLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQLPILSIGIPFSVTVNCCFLTGLLFCHSIPDLKKLSLWSLHTFDLRINFVRGRALVNYKVAACDLVFMGSNVGKSLSALEYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQLALRGPPNFGKDRAGMSRFDSGGGGGGRWESGGRGGVRDGGFGGRGGMRDGGFGGRGGGFGGRGGMRDGAGGQGGRDQQVSDKKDLRAPEAGASDTKMFPVSPSTQGHSSLGTEHVEQQPVVGSTGPDNPEVAVDLSHQPASDI 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi168g00029 1090 Gene3D - 468 703 IPR027417 -
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 50 72 - -
Sebi168g00029 1090 Pfam DEAD/DEAH box helicase 515 685 IPR011545 GO:0003676|GO:0005524
Sebi168g00029 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 939 IPR027417 -
Sebi168g00029 1090 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Sebi168g00029 1090 FunFam ATP-dependent RNA helicase RhlB 782 951 - -
Sebi168g00029 1090 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 447 948 - -
Sebi168g00029 1090 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 642 650 IPR000629 -
Sebi168g00029 1090 FunFam probable ATP-dependent RNA helicase DDX17 467 699 - -
Sebi168g00029 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 698 IPR027417 -
Sebi168g00029 1090 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Sebi168g00029 1090 SMART ww_5 21 54 IPR001202 GO:0005515
Sebi168g00029 1090 SMART ultradead3 510 713 IPR014001 -
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 86 211 - -
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 1044 1071 - -
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 952 1090 - -
Sebi168g00029 1090 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 804 948 IPR001650 -
Sebi168g00029 1090 Pfam Helicase conserved C-terminal domain 801 909 IPR001650 -
Sebi168g00029 1090 Gene3D - 785 950 IPR027417 -
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 1 27 - -
Sebi168g00029 1090 CDD SF2_C_DEAD 791 918 - -
Sebi168g00029 1090 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 696 IPR014001 -
Sebi168g00029 1090 SMART helicmild6 825 909 IPR001650 -
Sebi168g00029 1090 Pfam WW domain 22 52 IPR001202 GO:0005515
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 85 211 - -
Sebi168g00029 1090 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Sebi168g00029 1090 MobiDBLite consensus disorder prediction 52 71 - -
Sebi168g00029 1090 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi168g00029 Sebi-Chr168 473897 480837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi168g00029 481 919 Eukaryotic Initiation Factors Gene Family AT5G11200 27.312 8.67e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi168g00029 K12823 - gmx:100807830 1043.49