Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi168g00016 ATGTCCAATTTCAACAAGGGTGATCCCGTGGAGGTGACCAAGGCCAACGACAGCAGCGATTGCCATTGCTACTACTACCCTGCCACCGTTGTACGGCCACCCTCCAAAAGCAAAAACCTGGTGTTCGTGGAGTATCTCACCCTCTTCGCCCCTTCCTCACACTCACAATCACAATCGCAAACCCCCAAACGCCTCAGGGAGTACGTCAATGTCGCTAACGTCAGGCCCAAGGTTCCTCACCAGCTCAACCCTTGGTTCAAGGTCGGTGACTCCGTCGACGCCTTCCGCCATCCTCTCAATGCTTGGTGCCCAGCCACCGTCACTGACATTCTCGAAAACTCCACTTACCTCGTCCACTTTCACGGCTCTCACCATCACTCTGCCCCCGTCGATCACTGCAACCTGCGCCTTCACCGGGATTGGCTCCATGGAGATTGGGCCCCACCTCTCCCCCAACTCCAACAGCTATTAGCTAAGGGTTTGTCTTGTTCTAAGGATTTTTCACAGATATTGGATTCCTGGAGAAGCCCCCTCAGATATTGCCAAAGCCTGATACTCTTAGGAAAAGACAGGTTTCTAATAGAATATAGGGACCTGACTACAGATGATGGCACCCAGCTCTTGAAAGAAGAAACCAATGCAGTGTTTATTAGGCCATGTCCCCCTGAAGTTCCAATTGTGGGTTCTTTCAAACAGTTTCAAGAAGTTGATGCATGGGATGTATTGAAATTTGAAAATTCTAAACTAAGGCCTCATCAGGACTGGATCGATGGGAAATGGGTCATGTCTTCCAAGACATCAAGTGAGCTGGTGGAGAAGTTTGGAGATGTGATGCCTAAAGCCAAGAGTCTCATTGGAAATAAATTAATCTTGAAATATCGAAAGCCTAGTGAGCAAGCAAAGAAGCCTAGAGATGTAATGGCGAGGACCACAAACACCAAAGACAAATTTGTGTTGCATTTCTGTAAAGGTGCAGACATAGAAGTCAGAAGCGATGAAGAAGGCTACCAAGGTTCCTGGTATGCTGCCATTGTTGTTGATTATTTGCAGAATGGAAAGTACTTGGTGGAGTATTTGACCCTGAAAACAGATGACTTAACTGAGCAACTGAAAGAAGAAGCAGATGCTTCAGATATCAGGCCATATCCACCAGATATCAGTCAAGATTATCGCTTTGCACTGCATGAATGGGTTGATGCTTGGTATAATGATGGATGGTGGGTAGGTCAGGTATCTAGTGTTCTTCGTAATTTCAAGTATATGGTTTACTTTTGGCCTACAAAGGAGGAGCTGGAATTTGAGCATTATAATCTGAGGCCTCATCAAGAATGGATTGATGGAAGATGGGTGGGTGCTTCTTAG 1362 0.4655 MSNFNKGDPVEVTKANDSSDCHCYYYPATVVRPPSKSKNLVFVEYLTLFAPSSHSQSQSQTPKRLREYVNVANVRPKVPHQLNPWFKVGDSVDAFRHPLNAWCPATVTDILENSTYLVHFHGSHHHSAPVDHCNLRLHRDWLHGDWAPPLPQLQQLLAKGLSCSKDFSQILDSWRSPLRYCQSLILLGKDRFLIEYRDLTTDDGTQLLKEETNAVFIRPCPPEVPIVGSFKQFQEVDAWDVLKFENSKLRPHQDWIDGKWVMSSKTSSELVEKFGDVMPKAKSLIGNKLILKYRKPSEQAKKPRDVMARTTNTKDKFVLHFCKGADIEVRSDEEGYQGSWYAAIVVDYLQNGKYLVEYLTLKTDDLTEQLKEEADASDIRPYPPDISQDYRFALHEWVDAWYNDGWWVGQVSSVLRNFKYMVYFWPTKEELEFEHYNLRPHQEWIDGRWVGAS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi168g00016 453 CDD Tudor_Agenet_AtDUF_rpt2_4 398 440 - -
Sebi168g00016 453 CDD Tudor_Agenet_AtDUF_rpt1_3 321 384 - -
Sebi168g00016 453 Gene3D - 66 139 - -
Sebi168g00016 453 SMART agenet_At_2 390 446 IPR014002 -
Sebi168g00016 453 SMART agenet_At_2 319 387 IPR014002 -
Sebi168g00016 453 SMART agenet_At_2 84 143 IPR014002 -
Sebi168g00016 453 Gene3D - 309 390 - -
Sebi168g00016 453 Pfam Agenet domain 324 384 IPR008395 -
Sebi168g00016 453 Pfam Agenet domain 188 222 IPR008395 -
Sebi168g00016 453 Pfam Agenet domain 7 79 IPR008395 -
Sebi168g00016 453 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 2 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi168g00016 Sebi-Chr168 213864 216254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi168g00016 330 444 PHD Transcription Factor Family AT5G58610 28.889 9.77e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi168g00016 - - cam:101492247 410.609