Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00117 ATGGCATCACTGCCTCCAGGTTTTCGTTTCCATCCAACTGATGAAGAATTGATAGGATATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATTCCCGTGATCGATTTCTACAAATTTGATCCCTGGGAGTTGCCGGGAAATTTGAGAAGGCTAATTTGTGAGGTTTGGAACAATGCAGAGAAATCTTTCCTACCAAAAAGAGATTTGGAGTGGTTTTTCTTCTGTCCACGAGATCGCAAGTACCCAAATGGATCACGGACAAATAGAGCCACCAAAGCTGGATACTGGAAAGCCACTGGAAAAGACAGGAAGATTGTGTGTCACTCTAGTCCATTCACTTCCACTGAGACAGTGACAGGGTACCGTAAGACCCTTGTTTTCTATTGTGGAAGGGCACCCTTAGGAGATCGAACAGATTGGGTCATGCATGAGTATCGCCTTTGTGATGATCCTGCCCAAGGCTCACAGGGTGCTTTTGCTTTGTGCCGTGTTGTTAAAAAGAATGAGAAGGCCAATGATTTCCAAGGACACAAGGGCAAAAGCAGAAGGGTTGGGAACAATTCCACTAATGGGATTGGGAATGACACAACAATGAGATTCTCTAATGAGCTCTCCATTATCTCTGGTGATATTTCCTCTCAGGTTAGTCAAATGTGCAGTGCCAGTGAGAGTCGTTATTCAAGTCCTATTGATTCTCCATGCAATGTGGCTCCATTGACTGGGTTTGAGCAAGCTTCCACAAACACCAATCCCTCTAGCTTCTGGCTCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACTCTCAAATACAAGATGTTGTTGGATATTTTCCACAGCATGACTTATCAAGTACAATGACACCATGGCAATCATTTGAACATACAGAAATTTCACCCAGTTCATCCTACTCAAATTTTAATGGAGAAATGGAATTTTCTGATGATTTCAGTAAAATTGGCTGCATGTCACCTTACTCAGGACAAGGAAACTTCATGGACTTTTATGTAAATGAGGCTGTGCCTTATGAAAGTTATGACCAAATTAATTCAATCAGAGATCCAAAACAATTCTGA 1092 0.4176 MASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPGNLRRLICEVWNNAEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKIVCHSSPFTSTETVTGYRKTLVFYCGRAPLGDRTDWVMHEYRLCDDPAQGSQGAFALCRVVKKNEKANDFQGHKGKSRRVGNNSTNGIGNDTTMRFSNELSIISGDISSQVSQMCSASESRYSSPIDSPCNVAPLTGFEQASTNTNPSSFWLSPDMILDSSKDYSQIQDVVGYFPQHDLSSTMTPWQSFEHTEISPSSSYSNFNGEMEFSDDFSKIGCMSPYSGQGNFMDFYVNEAVPYESYDQINSIRDPKQF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00117 363 Gene3D NAC domain 13 177 IPR036093 GO:0003677|GO:0006355
Sebi167g00117 363 MobiDBLite consensus disorder prediction 186 200 - -
Sebi167g00117 363 SUPERFAMILY NAC domain 2 172 IPR036093 GO:0003677|GO:0006355
Sebi167g00117 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 249 - -
Sebi167g00117 363 FunFam Nac domain-containing protein 86 13 175 - -
Sebi167g00117 363 MobiDBLite consensus disorder prediction 179 200 - -
Sebi167g00117 363 Pfam No apical meristem (NAM) protein 5 152 IPR003441 GO:0003677|GO:0006355
Sebi167g00117 363 ProSiteProfiles NAC domain profile. 4 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00117 Sebi-Chr167 1626509 1628001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00117 2 317 NAC Transcription Factor Family AT4G17980 53.704 1.35e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi167g00117 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00117 - - adu:107487585 509.22