Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00113 ATGTGGAACCCTAGGGAGCAACAGCAGCAAGAGGAAGAAGAGGAAGAGTCATGGGAGGTGAGAGCTTTTGCAGAAGACACAAGGAACATAATGGGAACAACATGGCCTCCAAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCAGGTCAGCCCAAGCTCTAGGTGGCCACATGAACGTTCACCGCCGTGACCGTGCTCGCCTCCACCAACCTCACCCTCACCCTCCTACTGCCTCATTCATAAATATCCCATCTCAAGAGCTTGTTGCAAATGCAGGATTGTGCCTCCTCTATCATTTGCCCAGCCCTAATGCTTCTTCTTCTGCCTTCACTAGTCCTTCCTTGAACAATGCAAATGGAGAATCTCCCTCCACTCTTCTCTCCATCTCATCCTCCTATTCACCAAACAACTTGATGATGCAATCCTTTAATTTGCAAGCTGCAGCACCACCACCTTACTTTACCAAAGTGGAACAACCACAACCCACAACCTCTACCTCCATAAATAACAATGGCCACCTTGAAGAGCTTGATCTAGAACTCCGCCTTGGCCACAAGCCTACACTAAATAGTACTTAG 582 0.488 MWNPREQQQQEEEEEESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPHPHPPTASFINIPSQELVANAGLCLLYHLPSPNASSSAFTSPSLNNANGESPSTLLSISSSYSPNNLMMQSFNLQAAAPPPYFTKVEQPQPTTSTSINNNGHLEELDLELRLGHKPTLNST 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00113 193 Gene3D Classic Zinc Finger 31 76 - -
Sebi167g00113 193 SMART c2h2final6 40 62 IPR013087 -
Sebi167g00113 193 Pfam C2H2-type zinc finger 40 64 - -
Sebi167g00113 193 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Sebi167g00113 193 PANTHER OS07G0101800 PROTEIN 12 188 - -
Sebi167g00113 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Sebi167g00113 193 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00113 Sebi-Chr167 1532222 1532803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00113 1 188 C2H2 Transcription Factor Family AT4G17810 42.932 3.27e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi167g00113 zf-C2H2_6 3.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00113 - - cam:101504981 229.95