Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00110 ATGGAGGAGGATGATTGCAATTTGCTTCAACAATGCCACCCCAACTTGCTTGGTGATGAAGAGTTACTTTCTCTTGACATCGCAAGTGCCCTTCACCAACCTTTGTCTTCCGAGAGCTACACTTCTTATCCTCCTGCCTACACTTCCACAGATGAAACCAGACCTCGCAAGCACCACAAAACCCAACATCTTTCCCCTTCTCCATCCCCCTCTGACTCCCCCACCTCCCATCTTCTCTCCTTTGACAACTCAAACTTTTATGGGCTTAACTTTGAGCTTAACCCAAAACATAACGAGGTCGTTTCAGTCTCACCTCCGCCAAATGTGCCTCAAACCCAAAAGGACTCATCACAAGACCAAAACTTTGAAAGTATAATTAATCCACAAGACCAACAAGGGACCAAGAGATCTCCTGCTCACACTCAAGACCACATCATAGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTTGCAGCTCTTATTCCCGGCTTAAAGAAGATGGACAAGGCTTCAGTTCTAGGAGACGCTATCAAGTACGTGAAAGAGCTCCAAGAGCGTTTGAGGTTACTGGAAGAGCAGAGCAAGAACAGAGAGGTAGCGTCTGTGGTGATGATCAATAAACCAACGCTCATCAGCTGCGACGATCATTCATCCGATGATGGTGGTAATGGGGATGAACCACCGCTCCCCCATGTGGAAGCAAGAGTGTCAGAGAAGGACGTGCTCCTTCGCATCCACTGCCAAAACCAAAAGGGTCTTTTACTCAAAATACTTGCCGAGGTTCAAAACCTTCATCTCTTTGTTGTCAATAGCAGTGTCCTACGCTTTGGGGACGCTATCCTTGACATAACCATTGTTGCTCAGGTTCACACTAGCTAG 894 0.472 MEEDDCNLLQQCHPNLLGDEELLSLDIASALHQPLSSESYTSYPPAYTSTDETRPRKHHKTQHLSPSPSPSDSPTSHLLSFDNSNFYGLNFELNPKHNEVVSVSPPPNVPQTQKDSSQDQNFESIINPQDQQGTKRSPAHTQDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERLRLLEEQSKNREVASVVMINKPTLISCDDHSSDDGGNGDEPPLPHVEARVSEKDVLLRIHCQNQKGLLLKILAEVQNLHLFVVNSSVLRFGDAILDITIVAQVHTS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00110 297 SMART finulus 145 194 IPR011598 GO:0046983
Sebi167g00110 297 Gene3D - 129 190 IPR036638 GO:0046983
Sebi167g00110 297 MobiDBLite consensus disorder prediction 98 120 - -
Sebi167g00110 297 Coils Coil 178 205 - -
Sebi167g00110 297 MobiDBLite consensus disorder prediction 64 79 - -
Sebi167g00110 297 MobiDBLite consensus disorder prediction 217 236 - -
Sebi167g00110 297 MobiDBLite consensus disorder prediction 37 79 - -
Sebi167g00110 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 200 IPR036638 GO:0046983
Sebi167g00110 297 PANTHER BHLH TRANSCRIPTION FACTOR 33 295 - -
Sebi167g00110 297 MobiDBLite consensus disorder prediction 104 120 - -
Sebi167g00110 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Sebi167g00110 297 CDD bHLH_AtNAI1_like 140 212 - -
Sebi167g00110 297 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00110 Sebi-Chr167 1487610 1490059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00110 41 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.647 4.40e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi167g00110 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00110 - - gmx:100816551 282.722