Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00109 ATGATATCAACGGAGGAGTCATGGACAAGTTGGTTGTGTGATTTGGAAGCAGAGGATTACAATTTCATCAATCAATCCGAGACCGAAGGAAGTTTCCCTGCGCCACAAGAACAGAACTTGCAACGATCTTTCTCTACTGATAGCTACCGCTCGTACGCCACTTCCACTACTTCCACCTTCAAAACCGAAAACTCCAGCACCATGAGCAATTCCTCCTCAGGGGATGTTAACAGCTTCCAGAGGGAGAGGCCTTCCAAGACACTCAAGACCGGGCCTTCAAATTCTCCTAACACTGGCAGCTACATTCTTTCGTTTAACAATGAGAATCCAGCACCAGCACCAATATTGAGCATGGATTCGAGCTTAAAGCCAAAAGGGAAGGTTGTGAATCATGGGAGATCTCTGCCCTCAAAGGAAAATCAAAAGAAGGAACCTAGACGCAATGTTCAGGAGGGAGAGAAGACCAGATCTCCTCACCATGCTCAAGATCACATTATTGCTGAGAGAAAGAGGAGACAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTAAAAAAGATGGACAAGGCCTCTGTTTTGGGGGACGCAATAAAGCACGTGAAAGAGCTCCAAGAGCAAGTGAAGGTACTGGAAGAGAAGGCTAAAAGGAAAAGCGCTGATTCGGTGGTATATGTTGAGAAATCCAAGTCCTCTGTAGACGAAGATGTCTCACTCTCAGACACCTCATCAAATTATGGCAACGGAAACTCCTATGATGACCCCTCAAAAACAAATCGATCACTGCCAGAAGTTGAAGCAAGGGTGTCGGATAAAAACGTCCTCATCCGAATCCACTGTGACAAACACAAGGGAGTGTTGATGAACATATTCAAAGAGATACAGAACCTTCATCTATCAGTGATCAATAGCAGTGCCTTGCTTTTCGGGACCTCCAAACTCGACATAACCATCATAGCCGAGATGGATGATGAATTCAACCTCAACGTGAAGGAGCTGGCTGGAAATCTTCGAGGGGGACTCTTGCAATTCATGTAG 1050 0.4562 MISTEESWTSWLCDLEAEDYNFINQSETEGSFPAPQEQNLQRSFSTDSYRSYATSTTSTFKTENSSTMSNSSSGDVNSFQRERPSKTLKTGPSNSPNTGSYILSFNNENPAPAPILSMDSSLKPKGKVVNHGRSLPSKENQKKEPRRNVQEGEKTRSPHHAQDHIIAERKRRQKISQQFIALSALIPGLKKMDKASVLGDAIKHVKELQEQVKVLEEKAKRKSADSVVYVEKSKSSVDEDVSLSDTSSNYGNGNSYDDPSKTNRSLPEVEARVSDKNVLIRIHCDKHKGVLMNIFKEIQNLHLSVINSSALLFGTSKLDITIIAEMDDEFNLNVKELAGNLRGGLLQFM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00109 349 PANTHER BHLH TRANSCRIPTION FACTOR 35 347 - -
Sebi167g00109 349 Coils Coil 198 225 - -
Sebi167g00109 349 SMART finulus 165 214 IPR011598 GO:0046983
Sebi167g00109 349 MobiDBLite consensus disorder prediction 136 164 - -
Sebi167g00109 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Sebi167g00109 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Sebi167g00109 349 MobiDBLite consensus disorder prediction 24 164 - -
Sebi167g00109 349 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Sebi167g00109 349 Gene3D - 158 228 IPR036638 GO:0046983
Sebi167g00109 349 MobiDBLite consensus disorder prediction 24 114 - -
Sebi167g00109 349 CDD bHLH_AtNAI1_like 159 233 - -
Sebi167g00109 349 MobiDBLite consensus disorder prediction 240 262 - -
Sebi167g00109 349 MobiDBLite consensus disorder prediction 240 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00109 Sebi-Chr167 1477675 1480967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00109 155 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.231 3.40e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi167g00109 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00109 - - tpra:123911002 371.318