Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00106 ATGTTTTCTTGTCTCGCTTCTCACTTACTCACGAGGAAAAGCACTAGGAAGTGTGACACATCCGTTACAAACACCCTCAAAGATCAGTATTTGAGGAGCATTCCCATCCTCACCATGCGATCACCAACAAAATTATTCAAGATGTCGCAGCTCATTTTCAACCATCCCTTACCCTTTTTACTATTATGTTTGTTGTGCTCAAGTCGAAGTAGCTTAGCGTCCATCCCGAGAGACTTTCAAATTTTGTTGCAAGTCAAGGACACCCAAATTCAAGATAAGAGCAATAGCCTAAAAGACTGGGTGCCAAACACACACCATAACCCTTGCAACTGGACTGGCATTACCTGCGATGCACGAAACAAATCAGTTGTCTCCATTGACCTCTCTGAGACTGGCATTTATGGCGAATTTCCCTTTGGTTTTTGTCATATTCAGACCCTCAAAAACCTTTTTCTTTCAGGGAATTTTCTGGGCAATTCCATCTCCTCCCAGTCTTTGATTCCCTGTTCCCGACTTCGTCTCTTGGACATCTCCGACAATTTATTCATCGGAACCTTGCCAGAATTCACACCAGAGTTTTCTGAACTAAGAATACTGGACCTCTCGCGGAACAACTTCACCGGAGATATTCCAACAAGTTTTGGTTGGTTTTCACAATTGAGGGTGCTCGTTTTGTCTGGAAACCTTCTCACTGGAACGATCCCTCCCTTTTTTGGCAACCTCAGTGAGTTAATTCGATTGGAAATTGTTAATAATCCCCTAAAACCAGGACCTTTACCTTCTCAAATTGGGAACCTTTCCAAGCTAGAAACTTTGTACCTCAGCACAATAAACCTCGTAGGGGACATACCAGAGTCCATTGGGAACCTAGTCTCGCTCAAGAACTTGGATTTGACTCATAACTCCATATCAGGCAACATCCCAAATAGCATTTCAGGCTTGAAAAGTGTGGTGAAGATTGAGCTTTATGACAACCAGCTTTCTGGTGAATTACCCCAAGGTTTAGCAAACCTCAGCAATTTGGTTATCTTGGACCTCTCTCAGAACACTCTCACAGGAAAATTGCCGGGCACGATCGCTTCATTGCATCTTTCTTCTCTCAACTTGAACGACAACTTTCTCGAGGGACAAGTCCCTGAAAGTTTAGCTTCAAACCCGAATTTGCATCAACTGAAACTCTTCAACAACAGCTTCACAGGGAAACTGCCGCAAGGTTTGGGGCAAAACACTGCGTTAGTGGATTTTGATGTCTCAACCAATAACTTCACAGGTGAGTTGCCTAAATACCTTTGCCAAAGGAGCACGCTTGAGCGTCTCATCACATTTAATAATCACTTTTCTGGAGCTCTACCTGATCAATTAGGCGAGTGCCATTCCCTCAACTATGTCAGAATCGAGAACAACCAACACTCTGGCTTGGTGCCACCCAAATTCTGGAGCCTTTCACAGCTTCAGTTTTTGCAAATGGAAAACAACAGGTTCGAAGGATCCCTCTCTGATTCCATTTCCCATGCCCGAGGAATCACCAAACTACTTTTATCCCGTAACAAATTTTCCGGCAAGTTCCCAGCGGGAATTTGTGAACTTGATCAACTTGTTGAGATTGACGTCAGCAAAAACCGATTTACCGGTGAAGTTCCCGCCTGTATAACCCGATTAAGGAAATTACTGAAGCTTGAGATGCAGGAGAACTTGTTCACTGGCGAGATTCCTGGTAACGTGAGTAATTGGACTTATTTGATCGAGTTGAACTTTTCGCATAACCGATTCTCCGGCTCAATCCCACCGAAACTTGGTAGTTTGCCAGATTTAATATACCTTGATCTCGCCGCGAATTCACTAACTGGGAAGATTCCGGTGGAGTTGACGAATCTGAAGCTCAACCAGTTCAACGTCTCTAACAACAAATTGTACGGGGAGGTTCCTTCAGGTTTCAACCATGAAGTGTACTTGTCAGGTCTAACGGGAAACCCGGGTTTGTGTAGCCCAGTTATGAAAACCTTGCGTCCTTGTTCAAGGCATAAACTCTTTTCTTTGGTTGTTATAATCATTTTAGTTGCTTGTGTTGTGCTCCTTCTAGGGTCCCTGTTGTTGTTCTTCATGAATAGAAAACCAACTATTCTTGGTGGCAAATCCAAGGGCTCTTTCATGACAACAATGTTTCAAAGAGTGGGGTTCAATGAGGAGGACGTAGTCCCATTTTTAACTAGCGAGAACATGATTGGAAGGGGGAGTTCTGGTCAGGTGTACAGGGTGAGGTTCAAGACAGGGCAGACAGTGGCAGTGAAAAAGCTCTGGGGTGGTACACAAAAACCAGATACAGAATCAGTGTTCAGGTCGGAGATTGAGACATTGGGGAGAATTAGGCATGTTAATATTGTGAAATTGTTGTTTACTTGTAGTGCTGATGACTTCAGATTATTGGTGTATGAGTACATGCAAAATGGGAGTTTAGGTGATGTGTTGCATCATGTAGACAAGTGTGACAAGTTAATGGATTGGTCCAGGCGGTTCAAAATTGCTTTGGGAGTGGCTCAGGGGTTGGCTTATTTACATCATGATTGTGTGCCAGCTATTGTTCATAGGGATGTTAAGAGCAATAACATATTGCTTGACCATGATTTTGTTCCTCGTGTAGCAGATTTTGGGTTGGCTAAGACATTGCAGCGTGAGGCCAGCAAAGATGTTATGTCCAGGATTGCTGGATCATATGGCTACATTGCTCCAGAGTATGCATATACACTGAAAGTGACTGAGAAGAGCGATGTCTATAGTTTTGGCGTGGTGCTTATGGAATTGATCACTGGCAAGAGGCCAAATGACTTTTCCTTTGGTGAGAACGAAGATATAGTGAAGTGGATCACTAAGACTGCTTTATCTCCATCTCCTGAAGGAAGAGATAGCAATTTTGGAGGAGGTCATGACTGTGTTCTGACCCAGATTATGGACCCAAGGTTGGACCCAACTACTTGTGATTATAAAGAGATTGAGAAGGTTTTAAATGTAGCTTTACTTTGCACCTCAATGTTTCCCATTAATAGGCCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGGCTTATCCTAAGTCATGA 3105 0.4335 MFSCLASHLLTRKSTRKCDTSVTNTLKDQYLRSIPILTMRSPTKLFKMSQLIFNHPLPFLLLCLLCSSRSSLASIPRDFQILLQVKDTQIQDKSNSLKDWVPNTHHNPCNWTGITCDARNKSVVSIDLSETGIYGEFPFGFCHIQTLKNLFLSGNFLGNSISSQSLIPCSRLRLLDISDNLFIGTLPEFTPEFSELRILDLSRNNFTGDIPTSFGWFSQLRVLVLSGNLLTGTIPPFFGNLSELIRLEIVNNPLKPGPLPSQIGNLSKLETLYLSTINLVGDIPESIGNLVSLKNLDLTHNSISGNIPNSISGLKSVVKIELYDNQLSGELPQGLANLSNLVILDLSQNTLTGKLPGTIASLHLSSLNLNDNFLEGQVPESLASNPNLHQLKLFNNSFTGKLPQGLGQNTALVDFDVSTNNFTGELPKYLCQRSTLERLITFNNHFSGALPDQLGECHSLNYVRIENNQHSGLVPPKFWSLSQLQFLQMENNRFEGSLSDSISHARGITKLLLSRNKFSGKFPAGICELDQLVEIDVSKNRFTGEVPACITRLRKLLKLEMQENLFTGEIPGNVSNWTYLIELNFSHNRFSGSIPPKLGSLPDLIYLDLAANSLTGKIPVELTNLKLNQFNVSNNKLYGEVPSGFNHEVYLSGLTGNPGLCSPVMKTLRPCSRHKLFSLVVIIILVACVVLLLGSLLLFFMNRKPTILGGKSKGSFMTTMFQRVGFNEEDVVPFLTSENMIGRGSSGQVYRVRFKTGQTVAVKKLWGGTQKPDTESVFRSEIETLGRIRHVNIVKLLFTCSADDFRLLVYEYMQNGSLGDVLHHVDKCDKLMDWSRRFKIALGVAQGLAYLHHDCVPAIVHRDVKSNNILLDHDFVPRVADFGLAKTLQREASKDVMSRIAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDFSFGENEDIVKWITKTALSPSPEGRDSNFGGGHDCVLTQIMDPRLDPTTCDYKEIEKVLNVALLCTSMFPINRPSMRRVVELLKDHKLAYPKS 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00106 1034 Gene3D Ribonuclease Inhibitor 75 256 IPR032675 -
Sebi167g00106 1034 ProSitePatterns Protein kinases ATP-binding region signature. 741 764 IPR017441 GO:0005524
Sebi167g00106 1034 ProSiteProfiles Protein kinase domain profile. 735 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00106 1034 SMART serkin_6 735 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00106 1034 FunFam Leucine-rich repeat receptor-like protein kinase 76 236 - -
Sebi167g00106 1034 Pfam Leucine rich repeat N-terminal domain 77 117 IPR013210 -
Sebi167g00106 1034 FunFam Leucine-rich repeat receptor-like protein kinase TDR 359 673 - -
Sebi167g00106 1034 Gene3D Phosphorylase Kinase; domain 1 729 812 - -
Sebi167g00106 1034 SUPERFAMILY L domain-like 362 684 - -
Sebi167g00106 1034 SUPERFAMILY RNI-like 125 471 - -
Sebi167g00106 1034 SUPERFAMILY Protein kinase-like (PK-like) 735 1024 IPR011009 -
Sebi167g00106 1034 Gene3D Ribonuclease Inhibitor 257 360 IPR032675 -
Sebi167g00106 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 859 871 IPR008271 GO:0004672|GO:0006468
Sebi167g00106 1034 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 364 1025 - -
Sebi167g00106 1034 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
Sebi167g00106 1034 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Sebi167g00106 1034 Pfam Protein kinase domain 737 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00106 1034 Gene3D Transferase(Phosphotransferase) domain 1 813 1031 - -
Sebi167g00106 1034 FunFam Leucine-rich receptor-like protein kinase family protein 259 357 - -
Sebi167g00106 1034 Gene3D Ribonuclease Inhibitor 361 672 IPR032675 -
Sebi167g00106 1034 FunFam leucine-rich repeat receptor-like protein kinase TDR 813 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00106 Sebi-Chr167 1415935 1419370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00106 78 1028 Receptor kinase-like Gene Family AT5G65710 55.372 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi167g00106 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00106 - - gmx:100813889 1412.51