Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00087 ATGAAGCCTATCCAAAATGTTAACAATCAAAATAACTGGTTGGGTTTCTCCCTCACTCCCCAAATCAATATAGGTGTTCCTCCACAGTCACAGCCTTCCTCTGCTGCTGAAACACTTCTACCAAGCTTTTACCACCCTACACATGTTCATAACTATGGTTTTTACTATGGACTTGAAGGTGAAAATGTTGGATTGTATTCAGCCTTGCCTATCATGCCATTCAAATCTGATGGCTCCCTATATGGGATAGAATCTCTGAGTAGATCACAAGCACAAGCATTGGCAACTACTTCAACACCAAAACTGGAAACTTTCTTTCGTGGCCAGACTATGACAATCCCTCAATATGAATGCAATACCAAAGAAGCAATGCATCTGAGCTTAGAAAGTATGTTTTACAACCAAACCTTTTGCCATGACCCAAACAATCCAAATAACCTAAATCATGTACATGAGAATATTAGCCAGCAACAACTCTCATATAACTCTTCCCTAAGAAACCATGATGTGATGTTAGAAGGGTCCAAGCAAAATCAGCTTTCAGACAGTGTCCAGCTCCCAAATATGTTTGAGGATCTGAAGAATTGGGTCTCAAGGGACTTTCCAGGTAGCCATGCACAGCAGTCAAAGATGATTGTTCCAGTGGAGGATAATGGAGGCGAATCCGGGTCCATTGGATCAATGACATATGGGGAATTACAGTCATTGAGCTTGTCCATGAGTCCTAGCTCACAATCAAGCTGTGTTACAAGTTCACAACAGACAACACCACCTGCTCTCATTGATTCTGTTGTTGCCTTGGATACCAAGAAACGGGGTCCTGAAATGGTGGACTTGGAGCAAAATCAGAAGCAAATGGTTCTTAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGGGGTTATGATGTGGAAGAAAAGGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATAAATTTCCCATTGGAGAATTATCATAAAGAAGTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCTTCCATATACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACATTCAGTACCCAAGAGGAAGCAGGTGAGGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACTAATTTTGATATAACAAGATATGATGTGGAAAAAATCATGGCAAGCAATAACCTTCTTAGCAGTGAACTAGCTAGGCGTAACAAAGTGATGGATGGTGGAACTGGGAAAGAGGCAATACACCATGAACCTTTAACATGTGATGACACTCTAATAATGCAGAAGAGGTGCAAAAGCCAATCAGAGTGGGAAATGGTTCTTTATCAAAAAGAAGCAGAGGAATTGAGTAAGATTGGAAGACTAGTGTCAAATCCTTCTTCGCTGGTAACAAGTTTGAGCAGCTCAAGAGAAGAAAGTCCAGATAAGACAAGCTTGCCAGTACTCTTTGATCAAATGCCTTCAACAGCTTCTAAATTATTGGCTACTATTTCAACTAGTAATGTTGGTTCTTGGGAGCCATCTTCTCATCTCAGGCCTGCACTTTCTTTGCCTCAGATGCCAGTTTTTTCTGCTTGGACCGATGCATAA 1794 0.4158 MKPIQNVNNQNNWLGFSLTPQINIGVPPQSQPSSAAETLLPSFYHPTHVHNYGFYYGLEGENVGLYSALPIMPFKSDGSLYGIESLSRSQAQALATTSTPKLETFFRGQTMTIPQYECNTKEAMHLSLESMFYNQTFCHDPNNPNNLNHVHENISQQQLSYNSSLRNHDVMLEGSKQNQLSDSVQLPNMFEDLKNWVSRDFPGSHAQQSKMIVPVEDNGGESGSIGSMTYGELQSLSLSMSPSSQSSCVTSSQQTTPPALIDSVVALDTKKRGPEMVDLEQNQKQMVLRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSWGYDVEEKAARAYDMAALKYWGPSTHINFPLENYHKEVEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAGEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKVMDGGTGKEAIHHEPLTCDDTLIMQKRCKSQSEWEMVLYQKEAEELSKIGRLVSNPSSLVTSLSSSREESPDKTSLPVLFDQMPSTASKLLATISTSNVGSWEPSSHLRPALSLPQMPVFSAWTDA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00087 597 FunFam AP2-like ethylene-responsive transcription factor 387 448 - -
Sebi167g00087 597 CDD AP2 387 448 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 ProSiteProfiles AP2/ERF domain profile. 301 352 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 SUPERFAMILY DNA-binding domain 300 354 IPR016177 GO:0003677
Sebi167g00087 597 Pfam AP2 domain 388 438 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 Pfam AP2 domain 301 344 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 ProSiteProfiles AP2/ERF domain profile. 388 446 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 SMART rav1_2 301 358 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 SMART rav1_2 388 452 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 Gene3D AP2/ERF domain 300 354 IPR036955 GO:0003700|GO:0006355
Sebi167g00087 597 Gene3D AP2/ERF domain 388 448 IPR036955 GO:0003700|GO:0006355
Sebi167g00087 597 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 146 480 - -
Sebi167g00087 597 SUPERFAMILY DNA-binding domain 387 447 IPR016177 GO:0003677
Sebi167g00087 597 CDD AP2 300 352 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 PRINTS Ethylene responsive element binding protein signature 428 448 IPR001471 GO:0003700|GO:0006355
Sebi167g00087 597 PRINTS Ethylene responsive element binding protein signature 302 313 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00087 Sebi-Chr167 1184665 1187929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00087 6 597 AP2-EREBP Transcription Factor Family AT4G37750 44.961 2.81e-155 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sebi167g00087 AP2 1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00087 K09285 - gmx:100787611 729.554