Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00072 ATGGCTTCGAGATTCTGGACTCAGGGTGCTAGTGAATCTGAGGAGGAAGAGAGTGATTATGATGAGGAGGTTGAGACTGGAGTGGGTGAATCTGCTAGTGAAGCCGTTACAAGCAGGTACCTGCGGGACAATGCAAGTGACAGTGATGATTCTGATGGCCAAAAGCGTGTTGTCAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACCGTGGACCAAATGAAGAATGCCATGAAGATCAATGACTGGGATTTCTTGGCCCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAATTGAAGAAGAACAATAAGCAATATGAGGATTTGATTAACAAATGCAGGGAGAATCCGGAGAGTGAGGAGGAAAAAGAGGAAGAAGAGTCGGAGGAAGAATATGAAAGTGATGATGAGATTATCGAGCCTGATCAGCTTAGGAAGCCAGAATTGAAATCAGATTCCGAAGCCTCTCATTATGAAGATGAAAAGGCAGATGCCGGTGAAGGACCTTGGGACCAAAAGCTTAGCAAGAAAGATAGACTTTTTGATAGACAGTTCATGAAAGACCCTAGTGAGATTACGTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATCCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAACCCGGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAATGGTTGATGATTCGGTGGAGCTAGATGAGAATGAAACTCAGAAAGGGCCTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGAGTATGTTGAGAGACTCAGGGATGAACCCGTGTTTTTGATTCTTGCTCAGAATGTCCAGGAGTATCTTGAAAGGGTTGGAAATTTCAAAGCTTCTTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAGCCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCAGACAGAAGATGGAGATAATGGAGGGGAGGTGAGTGAGGAGTCTAAAGGGTTTGAGGAAACAAGAATTCCTACTGCATTTGTGGTTACTCCAGAGCTTGTGGCCAGGAAACCCACATTCCCTGAGAATAGCCGGACCCTAATGGATTTATTAGTATCACTGATATACAAATATGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCTCAATCGCCCGGGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCATATGGACATTTCCACACAGATACTTTTTAACAGGGCCATGTCGCAATTAGGACTGTGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTCGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGTCAGATGCCTTATCATATGCACATAAATCTTGAGCTCTTGGAGGCAGTGCATCTTATATCTGCCATGCTGCTGGAAGTTCCCAATATTGCAGCCAATGTTCATGATGCAAAACGCAAGGTCATTAGTAAGACTTTCCGTCGCCTGCTTGAGATCAGCGAGAAACAAACATTCACGGGTCCACCTGAAAATGTCAGAGATCACATTATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCAAAAGGCTTTTGACATAATCGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGGGATGCAGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTGAGGACATACCTCTTTACCTTCTGTTCATCTTATGATTCCCTGAGTCTGGACCAGCTCACAAAAATTTTTGACCTCTCTGTTCCTCGCACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAACCAACTGGGTGCATTATTTTCCAAGATGTTGAGCACTCTAGGCTGCAGGGATTGGCATTCCAATTGACTGAGAAAGTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAGGCAAGGATAGGTGGTGGTGGTGGATTGGATTTGCCTCTAAGGAGGAGAGATGGCCAAGATTATGCTGCTGCTGCTGCAGGTGGTAGTGGAACAGCCTCAGGTGGTAGGTGGCAAGACTTGTCCCTTTCCCAGCCAAGGCAAGGCCGTGGACGTGCAGGATATGGTAGTGGTGGTGGAAGGCCATTGGCATTAGGTCAAGCAGCTAGGAGTGGCTATTCAAGGGATCGAATGGGACGAGGAACAGGTGCTGGCTATCAGAGTGCATATGGGAGGACAACTCAAGGTGGTGCAGCATTGAGGGGAACCCCGGGTGACGTATCTACTCGCATGGAGTTGAGAATTTGGCTTCATAAAGCTTGGGACGTGAAGGTTGACCATGTTTTCAGGGAAGCTAATCTGGTAGCAAACTATCTTGCCAAGAGGGGGAAGCATAGGGATGGGAGGAAGGACGCAGAGGCAGCGACGGTGGTGATTGAGCATCCAGGAAGTACTAAGATCGAGAGAATTCACAGGTCAGTTAGCGCTCGCCAGGTGATGAACTCCAACCCTGGTCATTTTGTCGCTCTTGTCATTACCTCACAATCCCAGAATGGCACCACTATCAACCACCTCAAGCTTCTCCGACCCTGCCACACTTTGCTCATTGGCCATGTTTACCGCTTGATCACTTTTGAAGACGTATTGAAGGAGTTTGCTGCCAAGAAATGTGTTAAACTTGGGAAATTACTCAAGGAGACTGGTGGTCTTGGGGTTCAGATGAAGCACAGAGACAACAGACAACTCAATCCCACTGCTGTTAAGGTCGAACAGGAGCTTCACAGAATGGAAAGCTATGGTGGCGGCAACAACAATAACAAGGGAAGTGGAAGGCAATATGGTGGTGGTCGGGGTGGGGGGCAATGGAGGCCAGCCTTACAAAGCATTGCAGAAATTGGAACTTGA 3282 0.4595 MASRFWTQGASESEEEESDYDEEVETGVGESASEAVTSRYLRDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEEESEEEYESDDEIIEPDQLRKPELKSDSEASHYEDEKADAGEGPWDQKLSKKDRLFDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQYPNIMVDDSVELDENETQKGPDYNGPIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPVFLILAQNVQEYLERVGNFKASSKVALKRVELIYYKPQEVYDAMRKLAEQTEDGDNGGEVSEESKGFEETRIPTAFVVTPELVARKPTFPENSRTLMDLLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNIAANVHDAKRKVISKTFRRLLEISEKQTFTGPPENVRDHIMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDAVLEMLKDKIKEEALRTYLFTFCSSYDSLSLDQLTKIFDLSVPRTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQGLAFQLTEKVSILAESNERATEARIGGGGGLDLPLRRRDGQDYAAAAAGGSGTASGGRWQDLSLSQPRQGRGRAGYGSGGGRPLALGQAARSGYSRDRMGRGTGAGYQSAYGRTTQGGAALRGTPGDVSTRMELRIWLHKAWDVKVDHVFREANLVANYLAKRGKHRDGRKDAEAATVVIEHPGSTKIERIHRSVSARQVMNSNPGHFVALVITSQSQNGTTINHLKLLRPCHTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKETGGLGVQMKHRDNRQLNPTAVKVEQELHRMESYGGGNNNNKGSGRQYGGGRGGGQWRPALQSIAEIGT 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00072 1093 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 86 614 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi167g00072 1093 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 85 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 137 155 - -
Sebi167g00072 1093 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 683 771 IPR000717 -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 43 63 - -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 97 116 - -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 117 136 - -
Sebi167g00072 1093 Pfam PCI domain 622 750 IPR000717 -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 1056 1082 - -
Sebi167g00072 1093 SUPERFAMILY "Winged helix" DNA-binding domain 678 753 IPR036390 -
Sebi167g00072 1093 ProSiteProfiles Forkhead-associated (FHA) domain profile. 919 986 IPR000253 GO:0005515
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 1 63 - -
Sebi167g00072 1093 Pfam PADRE domain 933 1090 IPR025322 -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 802 884 - -
Sebi167g00072 1093 Coils Coil 106 133 - -
Sebi167g00072 1093 ProSiteProfiles PCI domain profile. 582 754 IPR000717 -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 94 190 - -
Sebi167g00072 1093 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 832 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 12 28 - -
Sebi167g00072 1093 MobiDBLite consensus disorder prediction 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00072 Sebi-Chr167 1009330 1017782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00072 1 890 Eukaryotic Initiation Factors Gene Family AT3G56150 65.199 0.0 1103