Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00053 ATGATGAGGTTCGTGAATTTGCTACGTGGATCCTTGATGTGGGCGAAGGCACTGCCGAGTGTACAGGGAAGCGATGTTGTTATTATCCCAACTAAAATGTTGTTGACTGGGGATGGTAACCCTATTGAGGAGATTGTTGACTATGTCACTTGTCATTCATTTTCCGCCAACAAGTTTCTGCTATTCCCCGAAACCTTTCCCACTCCCTCCATTTTCTTCCTCCGTCGCTTAGCTGCATCGGCAACAACTCCGTTTTCACGCCCTCACCGCTCTCATCATCCGCTCCCGCCGTCCGACACCCTGGCGCAGAAGATTGGAAAATCCACTCGCCACCCTGGCGCTACCTCTAAGGCCAGAGTTTACACCGATATCAATGTTGTCCGCCCCAAGGAATATTGGGACTACGAGTCCCTCACCGTCCAGTGGGGGGAGCAAGATGATTATGAGGTTGTGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGCGTTTGAGGGTGTTCACTGCACGGATAATGAAAAATGTATCATCAAGATCCTGAAACCCGTCAAGAAGAAGAAGATAAAGCGGGAGATCAAAATATTGCAAAATCTTTGTGGAGGACCCAATATTGTAAAGTTGCTTGACATCGTTAGAGATCAGCAATCAAAGACCCCAAGCCTTATATTTGAATATGTTAATAACACAGATTTTAAAGTGCTCTATCCTACCCTGTCAGATTATGATGTACGATATTATATCTACGAACTTCTAAAGGCACTGGATTATTGTCATTCACAAGGAATCATGCATCGGGACGTAAAGCCTCATAATGTAATGATTGACCATGAGCAACGTAAGCTTCGCCTTATAGATTGGGGCCTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTCCGCGTTGCCTCGAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGTCTCTTGGTTGTATGTTTGCTGGAATGATATTTCGTAAGGAACCATTCTTTTATGGACATGATAACCATGATCAACTAGTAAAAATAGCTAAGGTGCTTGGAACAGATGAATTAAATGCATATCTGAACAAGTATCACATACAATTGGATCCACATCTTGCAGTGCTTGTTGGGAGGCATGGCCGGAGGCCATGGACGAAGTTCATTAACGTAGATAATCAACACTTGGCTGTTCCTGAGGCTGTTGACTTCGTTGACAAGTTACTGCAGTACGATCACCAAGAACGGCCCACTGCAAAAGAAGCTATGGCTTCTAATATGATTTATCTCTAG 1308 0.4396 MMRFVNLLRGSLMWAKALPSVQGSDVVIIPTKMLLTGDGNPIEEIVDYVTCHSFSANKFLLFPETFPTPSIFFLRRLAASATTPFSRPHRSHHPLPPSDTLAQKIGKSTRHPGATSKARVYTDINVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEAFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDVRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHIQLDPHLAVLVGRHGRRPWTKFINVDNQHLAVPEAVDFVDKLLQYDHQERPTAKEAMASNMIYL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00053 435 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Sebi167g00053 435 PANTHER CASEIN KINASE II SUBUNIT ALPHA 111 431 IPR045216 GO:0004674|GO:0006468
Sebi167g00053 435 SUPERFAMILY Protein kinase-like (PK-like) 120 429 IPR011009 -
Sebi167g00053 435 CDD STKc_CK2_alpha 129 429 IPR045216 GO:0004674|GO:0006468
Sebi167g00053 435 FunFam Casein kinase II subunit alpha 225 435 - -
Sebi167g00053 435 Pfam Protein kinase domain 148 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00053 435 ProSiteProfiles Protein kinase domain profile. 148 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00053 435 FunFam Casein kinase II subunit alpha 134 224 - -
Sebi167g00053 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Sebi167g00053 435 Gene3D Transferase(Phosphotransferase) domain 1 225 431 - -
Sebi167g00053 435 SMART serkin_6 148 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00053 435 Gene3D Phosphorylase Kinase; domain 1 139 197 - -
Sebi167g00053 435 Gene3D Phosphorylase Kinase; domain 1 201 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00053 Sebi-Chr167 733363 741485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00053 146 428 Core Cell Cycle Gene Families AT1G76540 29.545 2.98e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Sebi167g00053 Pkinase 4.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00053 K03097 - zju:107409035 655.595