Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00045 ATGTCGAAGGCGCGTGTTTACACCGATGTCAATGTTCTTCGCCCCAAAGAGTATTGGGATTACGAGTCTCTCACCGTTCAATGGGGCGATCAGGATGATTATGAGGTGGTGCGAAAAGTGGGAAGGGGGAAATATAGTGAGGTTTTTGAAGGCATAAATGTCAATAGCAACGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAGAAAAAGGTGGTGTATACACCTTGGGAGGGAAGAGATGAGAAAGAAAGTGATATGATGGAAAAGGAAGAGAGGTGTAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGTCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCAAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCGGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTAGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAACCCGGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAAGACAGGCTAACAGCAAGAGAAGCTATGGCACATCCGTATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1074 0.406 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKVVYTPWEGRDEKESDMMEKEERCKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00045 357 Gene3D Transferase(Phosphotransferase) domain 1 135 344 - -
Sebi167g00045 357 Pfam Protein kinase domain 34 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00045 357 ProSiteProfiles Protein kinase domain profile. 34 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00045 357 FunFam Casein kinase II subunit alpha 135 346 - -
Sebi167g00045 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Sebi167g00045 357 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 353 IPR045216 GO:0004674|GO:0006468
Sebi167g00045 357 FunFam Casein kinase II subunit alpha 84 134 - -
Sebi167g00045 357 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Sebi167g00045 357 Gene3D Phosphorylase Kinase; domain 1 25 134 - -
Sebi167g00045 357 CDD STKc_CK2_alpha 15 343 IPR045216 GO:0004674|GO:0006468
Sebi167g00045 357 SMART serkin_6 34 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi167g00045 357 SUPERFAMILY Protein kinase-like (PK-like) 9 347 IPR011009 -
Sebi167g00045 357 FunFam Casein kinase II subunit alpha 25 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00045 Sebi-Chr167 552057 557219 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00045 32 343 Core Cell Cycle Gene Families AT1G76540 28.704 1.39e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Sebi167g00045 Pkinase 1.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00045 K03097 - gmx:100819679 661.373