Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi167g00020 ATGAATACATCCGTCCCTAGAAAAGACATGGATCGGATCAAAGGCCCATGGAGTCCCGAAGAGGACGAGGCTCTTCAGAAGCTCGTCGAGAAGCACGGGCCCAGGAATTGGTCCCTGATCAGCAAGTCCATACCTGGCAGGTCCGGCAAGTCCTGCAGGCTCCGGTGGTGCAATCAGCTCTCTCCCCAAGTGGAGCACAGAGCCTTCACTCCCGAAGAGGATGACACCATAATCAGGGCCCATGCCCGTTTCGGCAACAAATGGGCTACAATAGCCCGCCTCCTCTCAGGCAGAACCGACAACGCAATCAAGAATCACTGGAACTCCACTTTGAAGCGCAAGTGCGCTTCCATGATGATCGATGATGCTCAGCCGCTGAAGAGGTCCGTGAGTGCCGGTGCTGCTATGCCTGTTTCCACAGGGCTCTACATGAACCCACCCACACCTGGTAGCCCCTCTGGATCCGATATGAGCGAGTCCAGCGTACCAGTTAACTCCTCTTCCCATGTCTACCGGCCCGTGCCAAGGACCGGCGGGGTTCTACCGCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCATTATCCCTGTCCCTGCCAGGTGTCGACTCTTCTTCTGAAGTCTCAAATCGGGTACCTGAGCCAACTCATGCCGCACCACCACCGCCGCCGCCGCCAACTGCAATCCCCTTGCTTCCGATAATGGCGGCGCCGGTTCAGATGGCGGTTGCGCAGCAGTTTCATGAGCAAAAGGAGTTGGCGCCGTTCAATTTCAGTGCAGAGTTGCTGGGTGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGCGGGGCTGGAACAACAGAATGGGATGTGTTTTCAGGCAGCTGATGATGGGTTTAGGAACGCTTCGGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTAA 942 0.5563 MNTSVPRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDDAQPLKRSVSAGAAMPVSTGLYMNPPTPGSPSGSDMSESSVPVNSSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSSEVSNRVPEPTHAAPPPPPPPTAIPLLPIMAAPVQMAVAQQFHEQKELAPFNFSAELLGVMQEMIRKEVRSYMAGLEQQNGMCFQAADDGFRNASVKRIGISRIDS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi167g00020 313 FunFam MYB transcription factor 14 65 - -
Sebi167g00020 313 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Sebi167g00020 313 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Sebi167g00020 313 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Sebi167g00020 313 CDD SANT 68 111 IPR001005 -
Sebi167g00020 313 MobiDBLite consensus disorder prediction 144 172 - -
Sebi167g00020 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Sebi167g00020 313 FunFam Transcription factor MYB44 68 114 - -
Sebi167g00020 313 SMART sant 65 113 IPR001005 -
Sebi167g00020 313 SMART sant 13 62 IPR001005 -
Sebi167g00020 313 MobiDBLite consensus disorder prediction 1 21 - -
Sebi167g00020 313 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Sebi167g00020 313 MobiDBLite consensus disorder prediction 7 21 - -
Sebi167g00020 313 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Sebi167g00020 313 Gene3D - 67 129 - -
Sebi167g00020 313 MobiDBLite consensus disorder prediction 182 214 - -
Sebi167g00020 313 MobiDBLite consensus disorder prediction 141 229 - -
Sebi167g00020 313 PANTHER MYB PROTEIN-RELATED 14 188 - -
Sebi167g00020 313 Gene3D - 13 65 - -
Sebi167g00020 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Sebi167g00020 313 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi167g00020 Sebi-Chr167 245348 246289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi167g00020 7 312 MYB Transcription Factor Family AT4G37260 51.343 2.28e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi167g00020 Myb_DNA-bind_6 9.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi167g00020 K09422 - gmx:780556 435.261