Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00127 ATGGCAGCTAAGGCTACTCTGTCTCTTTCCTTCACGTCACCCTCTTCTTCCTTACTCAACCATAAGCCTCAATTCGGAGGTGCGGTGAAACACTTCCTTCTGTGTTCTGCGGGGCCTTTTCCTTCCTTATGTCTTGTTGCAGGACGCAGCTCCAAGGCTAGGGTTTTCACTGCCTTAGCAGCGGTGGTGGATGAAGAAACGGAACAAGAACACGTGGAGCGAGAAAACGATGAAGAGGAAGAGCAGTTTAAGCAGAGAAGAGCTACCGAAGTGTATGTGTGCAACCTTCCAAGAAGCTGTGACACAGAACAGCTACTTCATATGTTCAAGCCTCACGGATCCATTCTATCTATAGAGGTTTGCCGGAATCCGGAGACTGGTGAAAGTAAAGGGAGTGCTTTTGTCACATTAGGATCTATTAACTCCGCAAAAAATGCAATTGTTGCATTGGATGGAATGGATGTTGGTGGGAGGGAAATGCGGGTTAGGTTTTCAGTTCAGATGAATCCAAGTAGGAGGAATCTTGAGACAATGAACTCGTCACCCAAGAAAACTATATACTATGAAGGTCCTCATAAGGTCTATGTTGGGAATCTTGCTAAGTCTGCTAAACCTGAAGACGTGAGACAATTGTTCAGTAGATTTGGTAATGTGGCTAGTGTAAGGGTGTTGCAAGATTTGAAACAAGGGAAAAACCGGGTCTATGCGTTTGTCTCTTATCTTTCTGAGAGAGAACGTGATGAAGCAGTGTCCCTCAATGGAACAGAATTTTATGGGCGTAAACTAGTTGTTAGAGAGGGTGTAGGGAAAGCTGAGACATAG 822 0.4501 MAAKATLSLSFTSPSSSLLNHKPQFGGAVKHFLLCSAGPFPSLCLVAGRSSKARVFTALAAVVDEETEQEHVERENDEEEEQFKQRRATEVYVCNLPRSCDTEQLLHMFKPHGSILSIEVCRNPETGESKGSAFVTLGSINSAKNAIVALDGMDVGGREMRVRFSVQMNPSRRNLETMNSSPKKTIYYEGPHKVYVGNLAKSAKPEDVRQLFSRFGNVASVRVLQDLKQGKNRVYAFVSYLSERERDEAVSLNGTEFYGRKLVVREGVGKAET 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00127 273 PANTHER OS02G0815200 PROTEIN 33 265 - -
Sebi166g00127 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Sebi166g00127 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Sebi166g00127 273 SMART rrm1_1 193 265 IPR000504 GO:0003723
Sebi166g00127 273 SMART rrm1_1 90 163 IPR000504 GO:0003723
Sebi166g00127 273 SUPERFAMILY RNA-binding domain, RBD 85 177 IPR035979 GO:0003676
Sebi166g00127 273 FunFam 30S ribosomal protein 2, chloroplastic 179 267 - -
Sebi166g00127 273 Gene3D - 48 172 IPR012677 -
Sebi166g00127 273 Gene3D - 173 273 IPR012677 -
Sebi166g00127 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Sebi166g00127 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 161 IPR000504 GO:0003723
Sebi166g00127 273 SUPERFAMILY RNA-binding domain, RBD 188 271 IPR035979 GO:0003676
Sebi166g00127 273 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00127 Sebi-Chr166 1522091 1523338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00127 87 272 Eukaryotic Initiation Factors Gene Family AT3G16380 28.877 1.70e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00127 - - gsj:114400287 323.168