Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00093 ATGGTGATGAGGCAAGATGAGGAGCCATCAACCTTGCGCAGCTTGCAGGATGCTACGCCGGAGATTGACAGTAACTGCATACTTGCTCCATATTTCCCAACTGACGAGGTTGACAAATTTGTTGGAGTGCACAGAGTCTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAGACAAAGAGAGACGATGCTGTTAAAGCCATGGTGTACGAGGCAACGGCGAGGCTTAGAGACCCGGTTTATGGCAGTGCTGGAGCTATTTTGCAGCTTCAGAAGATGATTCAGGAACTGAAAGAGCACCTAGAATCCATGAAAATACGGGTAATGCAAGTGCGAGAACAAAAAGAGCAGTTGTTGAGCATCCTCAACAACAAAGCTAATGGACATCTTGATCCTGTATTTGATGGTTACAGCAATTTGCCAGTAGATTTTGATTATCTCATGGCCTCTGGTGATCCACTTGAATTTGCTGTAGAAGCAGGTGACTGGGTACATGCCAATATTAATAATAATACTATGTTAACACCCACTTGTTAA 546 0.4414 MVMRQDEEPSTLRSLQDATPEIDSNCILAPYFPTDEVDKFVGVHRVFGASNVIKMIQMVEETKRDDAVKAMVYEATARLRDPVYGSAGAILQLQKMIQELKEHLESMKIRVMQVREQKEQLLSILNNKANGHLDPVFDGYSNLPVDFDYLMASGDPLEFAVEAGDWVHANINNNTMLTPTC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00093 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Sebi166g00093 181 Pfam Lateral organ boundaries (LOB) domain 24 107 IPR004883 -
Sebi166g00093 181 Coils Coil 90 117 - -
Sebi166g00093 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00093 Sebi-Chr166 1087695 1088346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00093 25 155 AS2 family AT2G28500 43.511 2.50e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi166g00093 LOB 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00093 - - ccaj:109796546 198.364