Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00085 ATGGAAGCCGAAACTCGACGGAAAATCGAGGAGATGGTGTTGGATATACTGAAGAATTCCAATATAGAAGAGACCACTGAGCTCAGCGTCCGAATCGCTGCCTCGGAGCGACTCGGCATCGACCTCTCCGACCCGGAGGGCAAGCAGCTTGTCAGAACCGTCGTCGAGTCCTATCTTCTCACCGCCGCCGCCGAGGAGAAACCGCCCGAAGAGTCTCAGTTGAGAGAGGTGGTGAAACCTAAGAAGGAGGACTCGGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTCCGAGATTTCAAAGGGACAGCATTGGTGTCTATTAGGGAGTACTATCATAAAGATGGAAAACAGCTTCCCGGTCCTAAAGGGATAGATTTATCTGCTGATCAATGGTCAACCTTCAAGAAGAGTGTTCCCCGCCATAGAGGAAGCTATCACAAGGATGGAAGGAAGGATGAGATAAAGATTGAATATGTGCTTACTGAACCATGCCCAAATGCTACATTAGGAGAAGAAGCAAGTGCTGGAGCCAAAGCTTCTAAAAAGAGATGGGTAAATGATGATTTAATGTGTCGTCGCAGCATCTTGAGCCATTTATCTGATCATCTTTTCAATCAGTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAATTTGTTTATCAGTTTGAGGAATATGGAACCAAGAGATCCCAGGTGAAAAAGTATATCGAATTTCAGATGGTTGATGAGAAAGCTATTGTTGAGCAAATTCAAGAATTTAACAGCATTGCAGACTCTATTGTTGATGCTGGAATGTCTATTGAGGAGAACTTTCATGTCTGTGTCATCATTTCAAAGCTTCCACTATCCTGGAAAGACTTTTGCATCAAGTTAATGCGTGAGGAGTACCTACCTTTCTGGAAGTTAATGGAACGTATAAGGATAGAGGAAGAAACTCGCAACGGAGTCAAACATGTGGGTGAACCTTCTAATGGTATTAGATTTCGCCAGGCCAATAAAGGTGGAGACAGGGTAGCTAACAATAACAATAAGCCACCGGGGACAGAATGTGAAGAAGAAAATGTTACCTAG 1098 0.4399 MEAETRRKIEEMVLDILKNSNIEETTELSVRIAASERLGIDLSDPEGKQLVRTVVESYLLTAAAEEKPPEESQLREVVKPKKEDSERVICQLSNRRNVVVRDFKGTALVSIREYYHKDGKQLPGPKGIDLSADQWSTFKKSVPRHRGSYHKDGRKDEIKIEYVLTEPCPNATLGEEASAGAKASKKRWVNDDLMCRRSILSHLSDHLFNQYANRKMSAKELWEELKFVYQFEEYGTKRSQVKKYIEFQMVDEKAIVEQIQEFNSIADSIVDAGMSIEENFHVCVIISKLPLSWKDFCIKLMREEYLPFWKLMERIRIEEETRNGVKHVGEPSNGIRFRQANKGGDRVANNNNKPPGTECEEENVT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00085 365 Pfam gag-polypeptide of LTR copia-type 188 323 - -
Sebi166g00085 365 SUPERFAMILY ssDNA-binding transcriptional regulator domain 89 143 IPR009044 GO:0003677|GO:0006355
Sebi166g00085 365 Pfam DEK C terminal domain 5 59 IPR014876 -
Sebi166g00085 365 MobiDBLite consensus disorder prediction 344 358 - -
Sebi166g00085 365 Pfam Transcriptional Coactivator p15 (PC4) 90 140 IPR003173 GO:0003677|GO:0006355
Sebi166g00085 365 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 143 IPR045125 GO:0003713|GO:0060261
Sebi166g00085 365 Gene3D Transcriptional Coactivator Pc4; Chain A 80 153 IPR009044 GO:0003677|GO:0006355
Sebi166g00085 365 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Sebi166g00085 365 MobiDBLite consensus disorder prediction 328 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00085 Sebi-Chr166 953331 956224 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Sebi166g00085 Retrotran_gag_2 1.3e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00085 - - qsa:O6P43_017796 407.912