Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00074 ATGGAAATGAGGCAAGTTGACCGAGATGGAAATGGAAGGGGGAGAAGACCAGATAGAGAACGAGCAGAACAAGCTATCGCGACCACCGTCTTTCTAGACGCCGTCATCGCTTGCAGAACATGCAGGGGAGAAGGAGCGGTCTCCAGAGAAGGGAGCGGTCGCTTGAGGAGAAAGGAGCGGCTGCGAGAAGAAAAAGGATCGCGAAGGCGTGGGATTCTGTCCCCAATTGTGCTCTGCTGCTTCCTCGTGGAATTAGGGTTTTGGGGTGCACACGATTACGAGATGATAATTAAGCGGAATATGAAAGCTGAAATGCTGAACGTGAAGCGTTGTAAGCTAGAAGAAGACGAGGACTATGAGTATTCAGCGATTCAGAAGAAGCAGAGGGTGAACGGGTTTGGTTCTGTTGCTGACGGGTATTCTGGATCAGGGTCCAGTGAAGGATCGAATTGTGGTGGTGAGGTCCACTTCAATTCAAATTCTATGGAGTTGAATGGTGCAGATATAAAAGCACCTCCATTATTGCGGTCATCGAGAGGTCGCGTTCAGATGCTTCCAGCCAGGTTCAGTGACTCGGTTCTTGATACATGGAAATGGAAGAATAATGGACGAATTAAAATAGAAGACAAACGCTCCGGCTATGAAGTAGATGATAATAGTCTACGAGATATTGGACTGGGATTTGAGAAACAGGGAAAGAGAAAAAAATGTGGCTCAAAAAATTCTCATTGTTTTCCTGATTCTGCTGAAATAGAAATGGGTGGATTAGGTTTCAATGATTTTGACTACGAGAAGCATGCCAACTCGTTTAAGAGCATTAAAACGACAGTGAATGGGGGTCGTTCATTGTTGGTTAAAACAGAGAGTAATGGCATTGATGAAAACGCCAAAAGAAGGAAAGACATTTATAAACTAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAACAATATCCGGCGTGGCCTGCTGTGGTCATTGATCCCATCTTGCAAGCTCCCAAGTCTGTTCTCAACTGTTGTGTTCCTGGTGCAATTTGCGTTATGTTTTTTGGTTATTCAAAAAACGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGATATTCCCCTTCTTGGAATTCATGGGCAGATTCCAGGGGCAGACCCGATTGTACAAGAGCAAACTGAGTGACTTTCACATGGCAATGGAGGAGGCAATGCTGGCAGAAGATGGCATTTTGGACACACACTTGGGAGCTGAGCAAATTATGGATGGTGCAGCAGGTTCCTGTGTTGATCAGGAATATAGCTACCAAAACCAGGATACAATATCTTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCAAGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAACCCTGTGCAAAGTTACTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAACAAACTTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTTTACCGGTGCCAAATTGCAGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGTAGAGTCTGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTCTGTCCAGTAA 1737 0.4439 MEMRQVDRDGNGRGRRPDRERAEQAIATTVFLDAVIACRTCRGEGAVSREGSGRLRRKERLREEKGSRRRGILSPIVLCCFLVELGFWGAHDYEMIIKRNMKAEMLNVKRCKLEEDEDYEYSAIQKKQRVNGFGSVADGYSGSGSSEGSNCGGEVHFNSNSMELNGADIKAPPLLRSSRGRVQMLPARFSDSVLDTWKWKNNGRIKIEDKRSGYEVDDNSLRDIGLGFEKQGKRKKCGSKNSHCFPDSAEIEMGGLGFNDFDYEKHANSFKSIKTTVNGGRSLLVKTESNGIDENAKRRKDIYKLEDFALGDIVWAKCGKQYPAWPAVVIDPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMGRFQGQTRLYKSKLSDFHMAMEEAMLAEDGILDTHLGAEQIMDGAAGSCVDQEYSYQNQDTISCAGCGLMLPCKTKKKIKDSSCAPQHYCKPCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISNKLFKDLENIDYYCPDCKGKFTGAKLQSTKSAMGQRMFKILLPGFVESVKLLMLKESVASVQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00074 578 ProSiteProfiles PWWP domain profile. 310 379 IPR000313 -
Sebi166g00074 578 SMART PHD_3 482 534 IPR001965 -
Sebi166g00074 578 MobiDBLite consensus disorder prediction 1 20 - -
Sebi166g00074 578 SUPERFAMILY FYVE/PHD zinc finger 479 537 IPR011011 -
Sebi166g00074 578 CDD PHD_TCF19_like 483 533 - -
Sebi166g00074 578 Gene3D - 303 410 - -
Sebi166g00074 578 Pfam PHD-finger 482 535 IPR019787 -
Sebi166g00074 578 SUPERFAMILY Tudor/PWWP/MBT 306 409 - -
Sebi166g00074 578 SMART PWWP_4 308 377 IPR000313 -
Sebi166g00074 578 PANTHER PHD FINGER PROTEINS 165 512 - -
Sebi166g00074 578 CDD PWWP_AtATX3-like 311 410 - -
Sebi166g00074 578 ProSiteProfiles Zinc finger PHD-type profile. 480 536 IPR019787 -
Sebi166g00074 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 538 IPR013083 -
Sebi166g00074 578 Pfam PWWP domain 311 407 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00074 Sebi-Chr166 869542 875724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00074 424 507 EF-hand Containing Proteins AT5G28340 48.810 2.56e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi166g00074 PWWP 5e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00074 - - lja:Lj1g3v5034780.1 526.168