Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00072 ATGGACATCTTGAAGTTCCTCCTTCACTTGTTCATCTTTTTTCCTGTCATATGTGCCTCCTCAGAAGACTGCCAATATTCTTGGTGCAGCGAAAATAACATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTCAGCAACACCCTTACTGTGGCTATCCTGGTTTCAACTTAACTTGTACTAATGATAGCAAAACAGTTCTAAATTTTCCTTATAGCGGAGAATTCTATGTCCGCAACATCAACTATCTCAGACAACAGATACAAATCTATGACCCTGATGCTTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTCTCAGCTTCTCCTTTCAATGCCGCTTATCTCAGTAACTACACATTCTTAAGCTGCCCAACTCGGAACACAGGGCCACAATTCATTCCTGTTGACTGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCAGTGAACTTGACCAATTCATTGCCTGAGTATTGCCATGTTATCAGAAACCTCTCAGTTCCAGTTTCAAGGTCAGGGCGATATGAGGAAATTTTCAGAGATCAACTTAGTGAAGATCTTCGATTAACATGGTATTCACCTGACTGTAGATATTGCGAATTGCAAGATGGCAGGTGCGGATTTGAGAGCAGAAACAGTGATCAAGTTCGTTGTTTCTCTGATAACCAAACGGGTCGTTCACGAGATGGTCTTCGGGTTTTCAGAATCATCTTATTATCCATTGCGGGACCAGCTGTGATGTGTGCCATTGGGATGGCATGCTTCAAGCACAGAAGTGGCATTAGTAGTGCACCCAGAATTTCTGCTGTACAGAGGTTTGCACCAACAGCAATATTAATATCACCACAACCAGCCATTACTATGGTTGGTCTGGATGAGTCTACAATTGAGTCTTTTCAGAAGCTTGTACTTGGGGAGAGCCGAAGACTGCCGGGACCCAATGATGGATTTTGTTCAATATGCCTGTCAGAGTACAGCAGCAAGGAGACAATAAGATGCATTCCTGAGTGCTCACACTGTTTCCATGCTCACTGCATAGATGAATGGCTTCGCATGAACAGTACATGCCCACTTTGCCGCAACTCCCCCTCCCCTTCTCCTCTTGTTATGTCCAGTAATCCTTGA 1131 0.4341 MDILKFLLHLFIFFPVICASSEDCQYSWCSENNILIRFPFQLEGQQHPYCGYPGFNLTCTNDSKTVLNFPYSGEFYVRNINYLRQQIQIYDPDACLPKRLLSLNLSASPFNAAYLSNYTFLSCPTRNTGPQFIPVDCLSNSTHFVSAIPSVNLTNSLPEYCHVIRNLSVPVSRSGRYEEIFRDQLSEDLRLTWYSPDCRYCELQDGRCGFESRNSDQVRCFSDNQTGRSRDGLRVFRIILLSIAGPAVMCAIGMACFKHRSGISSAPRISAVQRFAPTAILISPQPAITMVGLDESTIESFQKLVLGESRRLPGPNDGFCSICLSEYSSKETIRCIPECSHCFHAHCIDEWLRMNSTCPLCRNSPSPSPLVMSSNP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00072 376 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Sebi166g00072 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 367 IPR013083 -
Sebi166g00072 376 SUPERFAMILY RING/U-box 313 365 - -
Sebi166g00072 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 366 IPR046948 -
Sebi166g00072 376 Pfam Wall-associated receptor kinase C-terminal 156 224 IPR032872 -
Sebi166g00072 376 CDD RING-H2_EL5-like 320 362 - -
Sebi166g00072 376 Pfam Ring finger domain 320 362 IPR001841 -
Sebi166g00072 376 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Sebi166g00072 376 SMART ring_2 320 361 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00072 Sebi-Chr166 863153 864630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00072 19 367 C3H Transcription Factor Family AT2G25410 44.663 1.41e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00072 - - gmx:100799895 545.814