Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00028 ATGGCGAAGAAAGAGGGAGGGGATGCGTCGGAATTGAAGCACAAGTTGTTGGGATTGGTGAAGATTATTGTCGACGGCGATGACTATACGGTGCAAACCACCGATGAGGCTATTGCTACTCTTTCGGCTTTGAAGGATTTGAAATATCGAAATCGAAGGTCTTTCTCTGACAAATTAGAGGACTTTCCCCTTCCTCCTCAATTTCGGTGTCCCATTTCTACCCAGTTGATGACCGACCCTGTTATCTTGTCCACTGGACAGACTTATGATCGGCCATTCATCCAGAGGTGGTTGAATGAAGGCCACAGAACATGCCCTCAAACCCAACAAGTTCTATCTCACTCAATCCTTACTCCTAATTACTTGGTCCGAGACATGATTGCACAATGGTGTAGGGATCATGGAATTGAGCTACCAGAGCCTGTTCGGGACATTGATGAAGTAGTGACTGATGCTGACAGAGGCCATTTAAATTCATTGCTTCATAAGTTGTCATTGTCTCTTTCTGATCAGAAAGAAGCTGCAAAAGAGCTTCGCCTGTTAACAAAGCGAATGCCTTCGTGTCGAACCATTTTTGGGGAGTCCAGTGATTTGATTACTCAGTTGCTCAGTCCATTATCACCTGGCAGGGCTTGTGCTCATCCTGATCTCCAGGAGGACTTGATCACAACTGTTTTAAATCTCTCAATTCATGATGATAATAAAAAAGTGTTTGGAGAAGATCCAACTGTTATTTCTCTGCTTATTGATGCCTTGAAATCTGGAACCATTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAACACATCATTGGAAAATCTGGAGCTATCAAACATTTGCTTAACCTTTTAGATGAGGGACATCCGTTAGCAGTGAAAGATGCTGCTTCAGCCATATTCAATCTATGTCTTGTGCATGAGAACAAAGGCAGGACTGTGCGAGAAGGGGCTGTTCAGGTTATTCTGAACAAGATCATGGACCAAATTCTAGTTGATGAGTTGTTGGCTATATTGGCACTCCTCTCCTGTCATCCCAGGGCTGTTGAAGAAATGGGTAATCTAGGTGCTGTTCCCCTCTTACTGTGTGCTATAAGAGACAGCACATCAGAACGAAGCAAGGAGAATTGTGTTGCAATCCTATATACAATCTGTTACAGTGATAGAACAAAGTGGAAGGAAATTAGAGAAGAAGAAAAGGCCAACGGTACACTGTCCAAGCTTGCAGAATGTGGAACTTCAAGGGCTAAAAGGAAGGCTAATGGTATTCTTGAGAGGCTCAATAGATCTCCCTCCTTAACCCACACTGCTTAG 1338 0.4335 MAKKEGGDASELKHKLLGLVKIIVDGDDYTVQTTDEAIATLSALKDLKYRNRRSFSDKLEDFPLPPQFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIAQWCRDHGIELPEPVRDIDEVVTDADRGHLNSLLHKLSLSLSDQKEAAKELRLLTKRMPSCRTIFGESSDLITQLLSPLSPGRACAHPDLQEDLITTVLNLSIHDDNKKVFGEDPTVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLNLLDEGHPLAVKDAASAIFNLCLVHENKGRTVREGAVQVILNKIMDQILVDELLAILALLSCHPRAVEEMGNLGAVPLLLCAIRDSTSERSKENCVAILYTICYSDRTKWKEIREEEKANGTLSKLAECGTSRAKRKANGILERLNRSPSLTHTA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00028 445 Pfam Armadillo/beta-catenin-like repeat 276 312 IPR000225 GO:0005515
Sebi166g00028 445 SUPERFAMILY RING/U-box 58 141 - -
Sebi166g00028 445 FunFam RING-type E3 ubiquitin transferase 147 440 - -
Sebi166g00028 445 Pfam U-box domain 65 134 IPR003613 GO:0004842|GO:0016567
Sebi166g00028 445 CDD RING-Ubox_PUB 65 117 IPR045210 -
Sebi166g00028 445 SUPERFAMILY ARM repeat 167 436 IPR016024 -
Sebi166g00028 445 Gene3D - 194 337 IPR011989 -
Sebi166g00028 445 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Sebi166g00028 445 FunFam RING-type E3 ubiquitin transferase 63 137 - -
Sebi166g00028 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 137 IPR013083 -
Sebi166g00028 445 SMART arm_5 231 272 IPR000225 GO:0005515
Sebi166g00028 445 SMART arm_5 273 313 IPR000225 GO:0005515
Sebi166g00028 445 SMART arm_5 352 394 IPR000225 GO:0005515
Sebi166g00028 445 Gene3D - 339 440 IPR011989 -
Sebi166g00028 445 PANTHER U BOX DOMAIN-CONTAINING 33 435 - -
Sebi166g00028 445 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00028 Sebi-Chr166 370253 372098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00028 126 445 U-box Gene Family AT3G07360 59.878 3.78e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00028 - - gmx:100806619 680.248