Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00016 ATGTGGGGTGTGATTATAAAAAAGGCGGGTGCTAAAAGCTACTCCCGCAACGGATTCTTTCAAAGAGATGGTCCTGGAGTTCACGCCAAGGCCAAGGTACTCTCTTCTTCATCAATTTCTTCTACTTTACTTTGCACGTTTCGAAGACTTGCAGGCTCTCTTTCACAGCCTTTGGACAAAGTGGTAATGAAGATGTCAAATCCGAAAGTTTTCTTTGATATTGTAATTGGAAAGATGAAGGCTGGGCGAGTAGTAATGGAACTGTTTGCTGATGTCACCCCAAAAACAGCTGAAAACTTCAGGGCTCTATGCACTGGGGAAAAGGGGATTGGAAATTCTGGGAAACTTTTACACTACAAAGGATCCTCATTTCATCGTATTATTCCAGAGTTTATGTGTCAGGGAGGAGATTTTACCAGAGGGAATGGGACAGGAGGAGAGTCAATTTACGGGGCCAAATTTGCAGATGAGAATTTCAAGCTGAAGCATACTGGCCCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTTCCCAGTTCTTTATATGTACTACAAAGACTGAATGGCTTGATGGTAAACATGTTGTGTTTGGTAAAGTTGTTGATGGATATAGTGTAGTGAAGGAGATGGAGAAGGTGGGTTCAGGAAGTGGCAGGACTTTGGAACCAGTAATAATTGAAGATTGTGGGCAGATAGCAGAGAACTGA 717 0.4268 MWGVIIKKAGAKSYSRNGFFQRDGPGVHAKAKVLSSSSISSTLLCTFRRLAGSLSQPLDKVVMKMSNPKVFFDIVIGKMKAGRVVMELFADVTPKTAENFRALCTGEKGIGNSGKLLHYKGSSFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGRTLEPVIIEDCGQIAEN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00016 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 167 182 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 210 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 194 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 136 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 119 136 IPR020892 GO:0003755|GO:0006457
Sebi166g00016 238 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 71 234 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 FunFam Peptidyl-prolyl cis-trans isomerase 63 236 - -
Sebi166g00016 238 CDD cyclophilin_ABH_like 68 233 - -
Sebi166g00016 238 Gene3D - 56 238 IPR029000 -
Sebi166g00016 238 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 69 235 - -
Sebi166g00016 238 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 78 233 IPR002130 GO:0000413|GO:0003755
Sebi166g00016 238 SUPERFAMILY Cyclophilin-like 60 235 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00016 Sebi-Chr166 179362 180816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00016 82 230 U-box Gene Family AT5G67530 48.684 5.48e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00016 K01802 - csin:114310748 323.939