Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi166g00014 ATGGATTCCTCATTCTTTGTTCCACACTCATCAAATTTTGAATTCCCTTCTGAGTCCTGTCCTAATTACCAATCCCTTCCCTTCAATGAAAATGACTCTGAGGAAATGTTTCTTTATGAAGTTCTGTCACAGGCTGGTGCAGAGTCCTTTGAAAACACAGCATCGGTATCTCATTCAAGAGAAGAAGAGGTGAGTTCCAAGGAAGAGGTTTCTTACAGAGGGGTTCGAAGGAGGCCATGGGGGAAGTATGCTGCAGAGATAAGAGACTCAACGAGGAATGGTGCCAGGGTTTGGTTGGGAACCTTTGACACTGCTGAGGCTGCTGCTTTGGCTTATGATCAAGCTGCATTAGCAATGAGAGGCTCAATGGCTGTGTTGAATTTCCCACCTGAGATGGTTCAACAATCACTTCAAAACATGGACTGTGGTGCTTTTCGAGAAGGGTGTTCTCCTGTTTTGGAGTTAAAGAAGAGACACTCCATTAAGAGGAAATCGGAGAGCAAGAAGTTGAGAAAGAAGCATGATGAAGAGGTGAGGTCAGAAAACAGGGTGGTGTTGGAGGATTAG 567 0.448 MDSSFFVPHSSNFEFPSESCPNYQSLPFNENDSEEMFLYEVLSQAGAESFENTASVSHSREEEVSSKEEVSYRGVRRRPWGKYAAEIRDSTRNGARVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPPEMVQQSLQNMDCGAFREGCSPVLELKKRHSIKRKSESKKLRKKHDEEVRSENRVVLED 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi166g00014 188 MobiDBLite consensus disorder prediction 55 70 - -
Sebi166g00014 188 Pfam AP2 domain 72 121 IPR001471 GO:0003700|GO:0006355
Sebi166g00014 188 MobiDBLite consensus disorder prediction 160 188 - -
Sebi166g00014 188 CDD AP2 72 129 IPR001471 GO:0003700|GO:0006355
Sebi166g00014 188 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Sebi166g00014 188 FunFam Ethylene-responsive transcription factor 2 70 131 - -
Sebi166g00014 188 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Sebi166g00014 188 PANTHER DNA-BINDING DOMAIN 52 171 IPR044808 GO:0003700|GO:0009873
Sebi166g00014 188 Gene3D AP2/ERF domain 71 130 IPR036955 GO:0003700|GO:0006355
Sebi166g00014 188 MobiDBLite consensus disorder prediction 50 70 - -
Sebi166g00014 188 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Sebi166g00014 188 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Sebi166g00014 188 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Sebi166g00014 188 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi166g00014 Sebi-Chr166 157651 158217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi166g00014 26 188 AP2-EREBP Transcription Factor Family AT3G23240 55.152 1.34e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi166g00014 AP2 2.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi166g00014 K14516 - tcc:18600104 205.297