Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi165g00052 ATGGCGACTAATCTTCTTGCAACTGGTTCGACTACTACGCCGTCGTCTCAGGAGAAACGACACCGTTCGATCTTCGAAGTTCAACCAGACTTCTTCAATTCTTGTCGCCTTCTCCATTCTCCCCACTCGTCCGTTTCCGAGCGTCACCACCACGCAGGCATCGAAACCCTTGAACCACCGTCAAACGACGTCGTTGCCGTTGATGATACTCAAAACGGAGTTTCGGTGCCTAGGTGGACCTGCAACACCTGCAAGGCTCAATTCGATTCCCTTCAAGACCAGCGTTCTCATTTCAAATCCGACATTCATCGATTCAATACAGGGCAGAGAGTTTCTGTCTGGAAGTGTTTGATTATGGATGTGAATGAAAATGTATTGTATGGGAATGAAAAAGTGGAGAATGAAGTGGTTGAGAGGTTGAAATCTCTGACTATTGAGCCAAGGGATAATACCCATTTGAGGATTGTTCTGCTTGCATCTGGTGGGCACTTTGCGGGTTGTGTCTTTGATGGTGATGCAGTTGTGGCTCACAAGACATTTCACAGGTATGTTGTAAGGGCCAAGGCAGGAAAAAAACAGTCATCTAAAGATGCTTCTGGCAGATCTATACATTCTGCTGGTGCTTCACTTCGTCGTTATAATGAACTTGCATTAAAAAAGGAAGTTCAAGAACTGCTTACTGCTTGGAAACCTTATTTTGATGCATCCAGATGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAAACCATATTTTACCAATCAGCAGCGTGCTGTTAGAAATATTGCTATGAGCGTTCGTAGGCCTACTTTCCGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCAAGTATACTATGAAGCAGATGAGAAGGAAATTTTACAAAGCAACAAAGAGGACTTGGTTCCTATTCACATTTCTAAAAGAAATGGCAGCCCACCCTCCAGCAAAGGAGACGTGGCTGGGTTGGATGTCGAAGATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATGAACCTATTTCAAGTAATGGAGAAAGTGAGAATGAGCTACCTGCTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTCAAAAGGTTATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATCACAGATGAAAGGGGACGGACCCCATATATGTTGGCACATGACAAGGAAGTCAGGAATGCTTTTAGAAGGTTCATGGCGTCAAATCTTGACAAATGGGATTGGCATGCTGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGCAGGAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTTCCTTGCTTAAGAATGATTCCAAAACTGTAGAAAGGCAATTGACTGCTCCAGTATCTTTTAAGGGAGAATCTCAACCAAAAAGTGGTGTGCAATTATCAAAAGAGGAGGAAATAAGAAGAGAACAGGCTGCAGAAAGAGAAAAGCGAGCAGCTGCCGCTGAGAGAAGAATTGCTGCCCTTAAAATTCAAGTTAATAGTGCAACCACTGCATCTAGCAATTCAGAGCCTAAAAGTGGATTAGCCGGTGACATCTATTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGATGGATGA 1788 0.4306 MATNLLATGSTTTPSSQEKRHRSIFEVQPDFFNSCRLLHSPHSSVSERHHHAGIETLEPPSNDVVAVDDTQNGVSVPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNTGQRVSVWKCLIMDVNENVLYGNEKVENEVVERLKSLTIEPRDNTHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRSIHSAGASLRRYNELALKKEVQELLTAWKPYFDASRCIFIHAPSSSRQLLYDGEKPYFTNQQRAVRNIAMSVRRPTFREAKRVYSQLTQVYYEADEKEILQSNKEDLVPIHISKRNGSPPSSKGDVAGLDVEDKAEACSSKQNDEPISSNGESENELPAKSTPLHQAAQSGDSQKVMELLEQGLDPCITDERGRTPYMLAHDKEVRNAFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAGKDAKRKARAKELKKLRKAKEKKAQAEASLLKNDSKTVERQLTAPVSFKGESQPKSGVQLSKEEEIRREQAAEREKRAAAAERRIAALKIQVNSATTASSNSEPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi165g00052 595 ProSiteProfiles Ankyrin repeat region circular profile. 360 386 - -
Sebi165g00052 595 MobiDBLite consensus disorder prediction 342 374 - -
Sebi165g00052 595 Pfam Vms1-associating treble clef domain 558 590 IPR041540 -
Sebi165g00052 595 ProSiteProfiles Ankyrin repeat profile. 360 392 IPR002110 GO:0005515
Sebi165g00052 595 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 110 IPR047139 -
Sebi165g00052 595 MobiDBLite consensus disorder prediction 1 21 - -
Sebi165g00052 595 Coils Coil 507 543 - -
Sebi165g00052 595 Coils Coil 447 486 - -
Sebi165g00052 595 Gene3D - 322 423 IPR036770 -
Sebi165g00052 595 MobiDBLite consensus disorder prediction 1 18 - -
Sebi165g00052 595 Pfam Bacteroidetes VLRF1 release factor 155 293 IPR041175 -
Sebi165g00052 595 MobiDBLite consensus disorder prediction 335 374 - -
Sebi165g00052 595 MobiDBLite consensus disorder prediction 489 515 - -
Sebi165g00052 595 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Sebi165g00052 595 SUPERFAMILY Ankyrin repeat 362 414 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi165g00052 Sebi-Chr165 1098586 1103964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi165g00052 102 542 C2H2 Transcription Factor Family AT1G01930 55.844 1.34e-154 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi165g00052 K26089 - gmx:100527709 749.199