Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi165g00047 ATGCAAAGGAAGGATAGGTGTCGTGAACCAAGGGCCATTACCCGCACACGTTGCCAAGCAAGGCTCCGTGTTCGTTTAGGTTACTTGAGTGGAAAATGGACAGTTACTCATTTTGAGCCCAATCATAATCACGAGTTGACCCCATCAACATATGTCCATTTGATTTCTTCATATAGAGGTCTTTCTGAGGGTGATAAGGCTCAAGTGAATAGTTTGCACATGTATGGTGTTCGAACTTGTCATATTTTGGGTTTCATATTAGGTCAGAAAGGGGGGTATGCAGATCTAGGCTTTTGCAAAAAGGATTTGTACAATCATATAGATAAGGACAAAAGGGCTAAAATTAAGGATGGTGATGCTTTTGTTGCCTTATGTTGCCTTCAGGCAAAAGCTGATAATGACCCGATGAATGCATGCGAGAATGTGAAGAGTCCTAAGTTTCTAGAGGAATTTAAGACATTACTTTACATTAACATTGGACCTGATGAGGCGGTTAAAGAATATAGACACAATGAGTTGATGTCTGATTTCAAGACTAAGTTTTCTGATCCTGTTCTGAGTATATCTTTGTATAAGTATGAAATTGCTGCATCCAAAGTTTATACAAGGAACAAGTTCTGGGACGTTAGGAAAGAGATTGAAAATGTTGCCGCTCTAAATGTCATTGATAGATCAGAAGTTGATAACAAAGTCAGGGTGAAGATAAACAAGTTTGGAAGTGCTTGTTCTGAGTATGTGGTGATATATGACAAAGATAAAGGGGTTTTCGCTTGTGACTGTCATCTATTTGAGTCTTGTGGCATTCCGTGCTCTCACATCTTTTGCACAATGAAAAATGAGAGTATAGAGGTAATACCTGAATCTTTGATATGCAAGAGATGGACGAAGGCAGCCAAGGATGAATTTATATCTGAATTAAGTGTTGCAGACAATGATTCTAGTAAATTGGATCTGTTGAGGACCAGTGCTGTTGCAGATGCATGTAATAGGCTTTTTAGAGCTACTTGTAAGTATATGGGAAATTATCGTTTAAATATTGATTCAATTAACAAGTTGACTAGTGAGATTGAAAAAAGAGGGAGTTCAGATAAGAACCGCAACAAAGGGTCCAATGTGATTGGTGACCCCATAGTGGTTAAAACTAAAGGTGCTCCACGAAAAGGGAAAAACAGGATGAAAAGCAGACATTGCTCGCATTGTAAGAGGACTGGTCATTATGTTTCTAAGTGTCCTGCTTTGAGAGATCGTGATAAGCTGGGAGAGGTTCAAGTTGACAACATGGCACAAGCTTCAGAAGATTAA 1302 0.3894 MQRKDRCREPRAITRTRCQARLRVRLGYLSGKWTVTHFEPNHNHELTPSTYVHLISSYRGLSEGDKAQVNSLHMYGVRTCHILGFILGQKGGYADLGFCKKDLYNHIDKDKRAKIKDGDAFVALCCLQAKADNDPMNACENVKSPKFLEEFKTLLYINIGPDEAVKEYRHNELMSDFKTKFSDPVLSISLYKYEIAASKVYTRNKFWDVRKEIENVAALNVIDRSEVDNKVRVKINKFGSACSEYVVIYDKDKGVFACDCHLFESCGIPCSHIFCTMKNESIEVIPESLICKRWTKAAKDEFISELSVADNDSSKLDLLRTSAVADACNRLFRATCKYMGNYRLNIDSINKLTSEIEKRGSSDKNRNKGSNVIGDPIVVKTKGAPRKGKNRMKSRHCSHCKRTGHYVSKCPALRDRDKLGEVQVDNMAQASED 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi165g00047 433 PANTHER OS01G0519700 PROTEIN 162 410 - -
Sebi165g00047 433 Pfam FAR1 DNA-binding domain 4 47 IPR004330 -
Sebi165g00047 433 SUPERFAMILY Retrovirus zinc finger-like domains 383 415 IPR036875 GO:0003676|GO:0008270
Sebi165g00047 433 ProSiteProfiles Zinc finger SWIM-type profile. 245 281 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi165g00047 Sebi-Chr165 1061652 1063556 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi165g00047 FAR1 1.8e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi165g00047 - - vvo:131629359 250.751