Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi165g00043 ATGGAAGCTTCTCCTTCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGGTACTTCGATTTGGCCACACAAGAGATCGACAAGGCCGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTCTTCTTCACTACAGAAACGCCCAGAAGATTCTCCTCGAAGCAAATTCTACTCCTGTTCCTTCCTTCATCACTCCCAGGTGTTTGGCAATAGTGTTGGGTTTGATGGAAAAAATGAAGGAGACTCTCAGTAGACGAGCAGGTAGTTCATCTGCGAATCAGAGCACCTCAAACCTTGCACGAAGTTCTACTGTTCCAATTAAACCATCAAATACTCCAAAAAATGTGATACAAAAGTATCCTCAAAGAACAGGTCAGGTGAACAAAGTTGGAAGCCCGAAATCTAATCAAGCATCTAGTGCAAATTATGACACAAAGCTGGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTTCTGGCCTTGAGAAGGCAAAGCAAGCTTTGATGGAGATGGTTATTTTGCCAGCTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAACGATGCTAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTGATTGGTGCGACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAAAGAATATACGTACCTTTACCAGATGAAAATGTTCGGAAACTTCTGCTAAAAAACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAAATGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAACTGGGTTCTAACATTCTCACTGTTAAGGCAAATCAGGCATGCTAG 1212 0.4241 MEASPSSSVSNERVAYKLKGYFDLATQEIDKAVRAEEWGLIDDALLHYRNAQKILLEANSTPVPSFITPRCLAIVLGLMEKMKETLSRRAGSSSANQSTSNLARSSTVPIKPSNTPKNVIQKYPQRTGQVNKVGSPKSNQASSANYDTKLVEMINTAIVDRSPSVRWDDVSGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKNKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQAC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi165g00043 403 MobiDBLite consensus disorder prediction 87 119 - -
Sebi165g00043 403 SMART smart 18 95 IPR007330 -
Sebi165g00043 403 PANTHER AAA DOMAIN-CONTAINING 47 401 - -
Sebi165g00043 403 FunFam Fidgetin like 1 335 402 - -
Sebi165g00043 403 SMART AAA_5 200 336 IPR003593 GO:0016887
Sebi165g00043 403 Pfam ATPase family associated with various cellular activities (AAA) 204 334 IPR003959 GO:0005524|GO:0016887
Sebi165g00043 403 CDD RecA-like_spastin 169 332 - -
Sebi165g00043 403 ProSitePatterns AAA-protein family signature. 306 325 IPR003960 GO:0005524|GO:0016887
Sebi165g00043 403 Gene3D - 163 334 IPR027417 -
Sebi165g00043 403 FunFam Spastin, putative 163 348 - -
Sebi165g00043 403 Pfam AAA+ lid domain 359 390 IPR041569 -
Sebi165g00043 403 Gene3D - 335 401 - -
Sebi165g00043 403 MobiDBLite consensus disorder prediction 88 119 - -
Sebi165g00043 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 393 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi165g00043 Sebi-Chr165 1035133 1040188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi165g00043 145 389 Calmodulin-binding Proteins AT3G56690 41.434 3.18e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi165g00043 K13254 - gmx:100780946 657.521