Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi165g00021 ATGGCAAGGCGAATGGTCTGGCGCTCCGGGGAGGTTATAACAATTTCCCCTACAACTTATCATTTCAGGGAGACGAACAGCGATGAGAAGCAAAATAAAGAAGAAGGAAGTAGCAGCAATGGTCTCTGTAAAGGAAGAACAGCGATGGGCAAGGTAGAAGAGAGGGACAAAGACAGTGGAGAGATGGTGAGGGGAAAAACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGACAAGTAACGTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAAGCCTTTGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAACTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGTAGGCATACCAGAAGTGCTCAACCAGTGCCAAGATCAGATGAACAAAATATGCAGAATTTGAAGCAAGAAACAGCAAGCTTGATGAAGAAGATTGAACTTCTTGAAGCTTCAAAACGGAAACTCTTGGGAGATGGTTTGGGGTCATGCTCCTTAGAAGAACTTCAACAGATAGAACAGCAGTTGGAAAAGAGTGTAAGCACTGTTAGAGCAAGAAAGACTCAGGTTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGAAAAAGCTCTACTTGCTGAAAATGCCAGGCTCTCTGAGCAGTATGGTACTGAGCCACAAAAAGTAACAAAAGATCAGATAGAAAATCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTATTCATTGGACTACACAGGTCTAGTTGA 813 0.4305 MARRMVWRSGEVITISPTTYHFRETNSDEKQNKEEGSSSNGLCKGRTAMGKVEERDKDSGEMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTRSAQPVPRSDEQNMQNLKQETASLMKKIELLEASKRKLLGDGLGSCSLEELQQIEQQLEKSVSTVRARKTQVYKEQIDQLKEKEKALLAENARLSEQYGTEPQKVTKDQIENQPYAESSPSSEVETELFIGLHRSS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi165g00021 270 Coils Coil 182 202 - -
Sebi165g00021 270 Gene3D - 74 160 IPR036879 GO:0003677|GO:0046983
Sebi165g00021 270 Coils Coil 148 168 - -
Sebi165g00021 270 MobiDBLite consensus disorder prediction 230 259 - -
Sebi165g00021 270 SUPERFAMILY SRF-like 64 139 IPR036879 GO:0003677|GO:0046983
Sebi165g00021 270 MobiDBLite consensus disorder prediction 48 68 - -
Sebi165g00021 270 MobiDBLite consensus disorder prediction 18 78 - -
Sebi165g00021 270 ProSiteProfiles K-box domain profile. 148 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi165g00021 270 PRINTS MADS domain signature 84 99 IPR002100 GO:0003677|GO:0046983
Sebi165g00021 270 PRINTS MADS domain signature 64 84 IPR002100 GO:0003677|GO:0046983
Sebi165g00021 270 PRINTS MADS domain signature 99 120 IPR002100 GO:0003677|GO:0046983
Sebi165g00021 270 Pfam K-box region 144 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi165g00021 270 MobiDBLite consensus disorder prediction 227 270 - -
Sebi165g00021 270 FunFam MADS-box protein SOC1 75 156 - -
Sebi165g00021 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 71 118 IPR002100 GO:0003677|GO:0046983
Sebi165g00021 270 PANTHER SERUM RESPONSE FACTOR HOMOLOG 64 237 - -
Sebi165g00021 270 SMART madsneu2 62 121 IPR002100 GO:0003677|GO:0046983
Sebi165g00021 270 ProSitePatterns MADS-box domain signature. 64 118 IPR002100 GO:0003677|GO:0046983
Sebi165g00021 270 Coils Coil 204 231 - -
Sebi165g00021 270 CDD MADS_MEF2_like 64 138 IPR033896 GO:0000977|GO:0045944
Sebi165g00021 270 ProSiteProfiles MADS-box domain profile. 62 122 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi165g00021 Sebi-Chr165 423727 451538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi165g00021 62 219 MADS-box Gene Family AT2G45660 78.261 2.03e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi165g00021 K-box 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi165g00021 - - gmx:100037477 350.903