Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi165g00013 ATGGAACAAGTTAAAGAAGAAAGTGATGCTGGTATCAAAGGGGAAGCCTTCGTTTCAAGTTTTGCACAGAGGATGACTGGTCCTACAAGACGATCAACCAAAGGAGGCTGGACAGAGCAGGAGGATAAATGGCTGATTGCTGCTGTGAAAACCTATAATGGAAAAAATTGGAAAAAGATAGCTGAATATGTTCCAACTAGAACAGATGTTCAATGCCTCCACCGTTGGCAGAAGGTTCTCAATCCTGATCTTATTAAAGGACCTTGGACAAAACAGGAAGATGATCTAATACGTGAGCTTGTTATGATAAAAGGGAAAAAGAGCTGGTCTGAGATATCAAAGTTCTTGCCTGGTCGCATAGGCAAGCAATGTAGAGAAAGGTGGCATAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACCAAAGAAGAGGAGTTGATTCTTGTCAAGACTCACCAAATGTATGGGAATAGATGGGCTGAAATAGCCAAGTTTCTGCATGGAAGGAGTGAAAACTCTATCAAGAATCATTGGAACTGCTCTATGAAGAAAAAGGTCAATTTAGATGCCTCTCTGCGTCTTCCTCAGTACAACTTAAATCTTAATTTTGAAGAAGGTAAAATGTCTATTGTCAAACAAAGTTCTGAGGAGAAAGAGAATGTGAACATAGACCAAAGAGCAAAGTCCAATTTGGGTTTTGGAATTATATATGCAAGAGAAAACCATGCACAATCATTGAATTCTGAAACTAGTATACATGTCAGAAATGAAGCTGGTTGTTTCACAAAACCACAATCTACATCTGCCCTGAATCAAACAAGCAATGAATCATGTGTTACTCCTTCCCCAGTGAAATTTGAGGCTAATGTCAATAGTGGAAGTATTGAAGGTCCTCAAAACAAGGACAACACATGTGTTAGTTCATTGTGCTACAAGCCCCTTCAACTTAAGGATTTGGACTTTCTTTTGGGAACTGGTAGAAAACCAAGCACTGACAATTATCTACAGAAGAATTCAAATCCTAATGCCCTTTATATTACCCCACCAAACTATACCAAAAGAATGTTTGATGATTGTCCAAGTGCAGCAGATATATTGAGGTCTGCTGCAAGGAGTTTTAAGAACACCCCATCTATCATAAGAAAAGGTAGGACTAAGTTGATAAAGAAAAATACAAGTAGCATTCAATTTTCAAAAGGGGATGTCAGGTTTAACTGCACCAAGAGCCCTAGGAGACTGGATTTTTCTCCATGTGAAAAAGTTGATGCCAACAATGCTGTCCTATATCAGATAGAAGGCTAA 1305 0.3862 MEQVKEESDAGIKGEAFVSSFAQRMTGPTRRSTKGGWTEQEDKWLIAAVKTYNGKNWKKIAEYVPTRTDVQCLHRWQKVLNPDLIKGPWTKQEDDLIRELVMIKGKKSWSEISKFLPGRIGKQCRERWHNHLNPDIKRTAWTKEEELILVKTHQMYGNRWAEIAKFLHGRSENSIKNHWNCSMKKKVNLDASLRLPQYNLNLNFEEGKMSIVKQSSEEKENVNIDQRAKSNLGFGIIYARENHAQSLNSETSIHVRNEAGCFTKPQSTSALNQTSNESCVTPSPVKFEANVNSGSIEGPQNKDNTCVSSLCYKPLQLKDLDFLLGTGRKPSTDNYLQKNSNPNALYITPPNYTKRMFDDCPSAADILRSAARSFKNTPSIIRKGRTKLIKKNTSSIQFSKGDVRFNCTKSPRRLDFSPCEKVDANNAVLYQIEG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi165g00013 434 Pfam Myb-like DNA-binding domain 89 146 - -
Sebi165g00013 434 SUPERFAMILY Homeodomain-like 35 96 IPR009057 -
Sebi165g00013 434 SUPERFAMILY Homeodomain-like 83 179 IPR009057 -
Sebi165g00013 434 CDD SANT 37 80 IPR001005 -
Sebi165g00013 434 Pfam Myb-like DNA-binding domain 34 80 IPR001005 -
Sebi165g00013 434 FunFam Transcriptional activator Myb isoform A 86 137 - -
Sebi165g00013 434 CDD SANT 88 132 IPR001005 -
Sebi165g00013 434 Gene3D - 85 137 - -
Sebi165g00013 434 Gene3D - 33 83 - -
Sebi165g00013 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 136 IPR017930 -
Sebi165g00013 434 FunFam Transcriptional activator Myb isoform A 33 85 - -
Sebi165g00013 434 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Sebi165g00013 434 PANTHER MYB PROTEIN-RELATED 33 80 - -
Sebi165g00013 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 80 IPR017930 -
Sebi165g00013 434 Gene3D - 139 229 - -
Sebi165g00013 434 SMART sant 33 82 IPR001005 -
Sebi165g00013 434 SMART sant 137 185 IPR001005 -
Sebi165g00013 434 SMART sant 85 134 IPR001005 -
Sebi165g00013 434 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Sebi165g00013 434 CDD SANT 140 180 IPR001005 -
Sebi165g00013 434 ProSiteProfiles Myb-like domain profile. 81 132 IPR001005 -
Sebi165g00013 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 187 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi165g00013 Sebi-Chr165 296646 301075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi165g00013 23 395 MYB Transcription Factor Family AT5G02320 42.494 3.09e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi165g00013 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi165g00013 - - qsa:O6P43_017574 435.647