Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi165g00001 GATATAGAAGCAACTGTTGTGAATGGAAATGGAACAGAAACTGGTCAAATAATTACTACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCGGAACGTGTGGTTGGTACTGGTTCTTTTGGTGTTGTTTATCAGGCGAAGTGCCTTGAAACTGGTGAATCAGTTGCTATAAAGAAAGTGTTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCATGCTTGACCATACTAATGTTCTTAAACTAAAGCACTGTTTCTATTCAACGGCCGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTTTGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACATATGCCTATCCTTTATATACAACTGTATACATACCAGATATGCCGTGGCTTAAATTATATGCATCATGTGGTTGGAGTCTGTCATCGTGACATCAAACCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGGGAACCCAACATATCATACATATGCTCACGGTATTATCGAGCTCCGGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATGTTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCAATGTTTCCCGGAGAGAGTGGGGTTGATCAGTTGGTAGAGATCATCAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAATGCATGAATCCAAATTACACAGAGTTTAAGTTTCCTCAGATAAAAGCACACCCATGGCACAAGGTCTTTCACAAAAGAATGCCTTCTGAAGCAGTGGATCTTGTATCAAGGATGCTTCAGTATTCACCTAATCTACGTTGCACTGCTTTGGAAGCATGTGCACACCCTTTCTTTGATGATCTGCGGGACCCAAATACAAGCTTGCCGAATGGGCGAGCAATGCCTCCTTTGTTTGATTTCACAGCTCAAGAACTGGCAGGCGCGCCTGATGAGTTGCGCCGAAGACTCATTCCTGAGCATGCAAGGCATTGA 1095 0.4283 DIEATVVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGESVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSTAEKDELYLNLVLEFVPETVYRVSKHYVRMHQHMPILYIQLYTYQICRGLNYMHHVVGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPSEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDPNTSLPNGRAMPPLFDFTAQELAGAPDELRRRLIPEHARH 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi165g00001 364 SMART serkin_6 35 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi165g00001 364 Pfam Protein kinase domain 35 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi165g00001 364 Gene3D Transferase(Phosphotransferase) domain 1 115 363 - -
Sebi165g00001 364 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 4 363 - -
Sebi165g00001 364 SUPERFAMILY Protein kinase-like (PK-like) 34 344 IPR011009 -
Sebi165g00001 364 CDD STKc_GSK3 30 322 IPR039192 -
Sebi165g00001 364 ProSitePatterns Protein kinases ATP-binding region signature. 41 65 IPR017441 GO:0005524
Sebi165g00001 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Sebi165g00001 364 FunFam Glycogen synthase kinase-3 beta 19 114 - -
Sebi165g00001 364 FunFam Shaggy-related protein kinase kappa 115 363 - -
Sebi165g00001 364 Gene3D Phosphorylase Kinase; domain 1 20 114 - -
Sebi165g00001 364 ProSiteProfiles Protein kinase domain profile. 35 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi165g00001 Sebi-Chr165 12762 15724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi165g00001 41 327 Core Cell Cycle Gene Families AT1G76540 34.797 6.64e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sebi165g00001 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi165g00001 K27414 - gmx:100786458 714.916