Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi164g00033 ATGTCTGCTTGCTTAGAAAAATGGGTCACACTTAACGATATCTCTCCCACAATTCATCCTTGGTTCACTAGAGTTCAGGTTATCCGAATATGGCCAACAACTTTCTGTTCTCATCCCACTCGAGTTCTTTCAGTTGAAATTGTGTTCATTGATGCTCAGGGAACCAAGATTCAAGGGTCTATTAGTAGAGATATTCTTAGGATGAGACGCATAACCATGGAGGAGGGCCATGAGTATGAAATCCAACGAGCTTCTGTGGTTCCAAACAATGGAAAGGACCGACCAACTTCTCATCCTTTTAGATTGGTTTTCAACATGAACTCAATAATAGTCCTGCTTGAAACTACCCCTTTGATTTCCTACGGTTTGTCTCCTGTAACTACCATCGATATAGTAAGGATCACCTCCCCCACAGAAATCCTTGTGGACAAAGTTGGAATTTTAACTTCTATTTCATCGGAAAGGGAATATGTGAAGGATGGAAAATACATTAAGGCGATTTCCTTGGAGATTAGAGACCCCACAGGGAAGACTGAATGTGTGTTATATGATGAGTATGTCGAAGATGTCAAACAGTTCCTCAAAAGGCATGGTCCAACCACCCCAATAGTGGTCGTCCAGTTTGCTCGAGTTGTTAGTAAGGGGGAAGTTGTCCTTGGGGAAGCTGCTGTTGAAAGTGTCCAAAATTTAGCAAGAATATTATTCAATCCTACCATTCCCGAGGTTTTCAACATGAAAAAATGGTTAGTCATCAATGGGATTAAGTTAGACAATCGAGTTGAATATATTAACCTGCACATGCCAAACCTGACTTTGCGAGATGAATTTCTATTGTATCATCCTAGAAGACAGATTGCCCAAGTCCTAAGCCGGGAAGAGCTTGGCCTGTTTGTTGTTTGGGGAAGAATTATTTCCCTCATGGAAGAAGAAAATTGGTGGTTTACTGAGTCCAAGCATCATACTTGTGCTTCACAAGGCAATCCATTACAGCCATGTGATGGCTATTTTAGTGTTATTCCAAGGTACCACTTAAAAGTTGAAGTCTTTGACAATGAGGACGAGTGTAAATTTTTGCTGGGTGATGAAGATGTACACAAGTTGTTGGATGTATCATGCAAAGATTTACTTCCTTCCATTGAGGATCCAAACTCCGAACTTTATCCTCCTATTTTTGAAAAGCTGATTGATAAGAGTATGTTGTTTTTGGTGGAGAAAAAATTCCCTAATTCTTATGTTAATGATGGTTATTTCAAGGTGAAAAGGGTTTGTGATGTTCCAGAGCTGATTAGAATGTACTTGAGGGGACAGTTTTTCCGTCTTCATCACACTACAAGGGACACAGTAGCAAAATTACTTGGGGTTGAAGGACCTGTGCTCCATTCCAATAATGCTCATGAAAGCTCACATGCCAGTGCCTTAGCAGTTGATAACTTTTCAACTACAGCTTCTGACATTGCTCAGGCATCTTCATCCAATAGTGTGTCATTCAACAATCAGAATATTGGGATTACACCTAACATTCCTGTTGAAGAATCTGATGTTGAACCAGTTGATAAGCATTGCTTGGACTCTACACCCTAA 1581 0.4029 MSACLEKWVTLNDISPTIHPWFTRVQVIRIWPTTFCSHPTRVLSVEIVFIDAQGTKIQGSISRDILRMRRITMEEGHEYEIQRASVVPNNGKDRPTSHPFRLVFNMNSIIVLLETTPLISYGLSPVTTIDIVRITSPTEILVDKVGILTSISSEREYVKDGKYIKAISLEIRDPTGKTECVLYDEYVEDVKQFLKRHGPTTPIVVVQFARVVSKGEVVLGEAAVESVQNLARILFNPTIPEVFNMKKWLVINGIKLDNRVEYINLHMPNLTLRDEFLLYHPRRQIAQVLSREELGLFVVWGRIISLMEEENWWFTESKHHTCASQGNPLQPCDGYFSVIPRYHLKVEVFDNEDECKFLLGDEDVHKLLDVSCKDLLPSIEDPNSELYPPIFEKLIDKSMLFLVEKKFPNSYVNDGYFKVKRVCDVPELIRMYLRGQFFRLHHTTRDTVAKLLGVEGPVLHSNNAHESSHASALAVDNFSTTASDIAQASSSNSVSFNNQNIGITPNIPVEESDVEPVDKHCLDSTP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi164g00033 526 MobiDBLite consensus disorder prediction 512 526 - -
Sebi164g00033 526 SUPERFAMILY Nucleic acid-binding proteins 137 257 IPR012340 -
Sebi164g00033 526 CDD RPA1_DBD_A_like 24 110 - -
Sebi164g00033 526 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Sebi164g00033 526 Gene3D - 6 111 IPR012340 -
Sebi164g00033 526 Gene3D - 279 425 IPR012340 -
Sebi164g00033 526 Pfam Domain of unknown function DUF223 46 117 IPR003871 -
Sebi164g00033 526 Gene3D - 126 253 IPR012340 -
Sebi164g00033 526 CDD RPA1_DBD_B_like 143 242 - -
Sebi164g00033 526 SUPERFAMILY Nucleic acid-binding proteins 280 410 IPR012340 -
Sebi164g00033 526 MobiDBLite consensus disorder prediction 505 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi164g00033 Sebi-Chr164 1160377 1163090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi164g00033 42 375 Core DNA Replication Machinery Family AT5G08020 20.950 1.42e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi164g00033 - - mtr:11425976 257.299