Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi164g00032 ATGGCGTTGGTCTCAGCTGGTTTCCATTCCATAAGTAATGTGTGCGGTAGAAAAGAGAGTTGGAGGCTGAAGGTGAAGGTTATCAGAGTGTGGAATATGTGCGCAATTGCGACCCCTGATGATCCATATGCCCTGCAAATGCTTCTTCTTGATGAAGAGGGCGGGTTGATCGAAGGGACTGTGCAGAAGCAAAATATGCAGAGGTTTTCATCGATCATTGTGGAGGGGCGTGTTTATAAGCTCACCAACTTCAACGTGGTTAAGAACGGTGGAAACTTTAGGGCTTCTGGTCATGATCATAAGATCCTGTTTACTGTCAACACCAAAGTGATTTGCTGTGAAAACGTTTCCATCCAAGGCATGGGATTCGCCCTAAAGAAGACTGATGAAATCATGCGAACAAATGGTTTCTCTGAGTACCTTCTAGATTTTATCAGCATATTGACTGCTGTTTCTGAGGAGATAACTTTGGTGAAGGGTGGAATGGAAAAGCGTCTCGTGTTACTTGATTTGGTGGACGAAATGGGAGAGATTAGATTTGCTGTTTTCGGTGATATGGTGGATGCCGTACTTGATAATCTCTCTCAGGCAGGATGTGGGTTTCTAGTGCTGATCATCCAGTTAGCTAGAGTTAATTTCTACAAGGTTCATGAGATTGAGACTGATGTAGCAGTGTCTGTCATAACACCTAGACCACGTCCTGTGTCTATGACGGATGAGTTTCTGAAATTGTACCCAAAGAAAACAGTGGGGGAGCTTTATGAATTGGTGGAGGAAGGTTATTTCATAATAATGGCCACTATTATGGAAGTTGTCCATGATGGCCATTGGTGGTATATGGCTTGCAGTTGTATGAGAGCTGTTAACTATGGCCGTGGAATGCCTTTCTGTGATGAATGCAAGACAATAGTCTATGATCTCACACAAAGGTATAAGATCAAGCTAATGGTCTCTGATGGAAACGACAATGCACATTTGATTATGTGGGACAGTGAATGTTACTCATTGATAAATAGATCATGTCGTGATCTGTTGGCAACTTCAAAGGGTAAGGGTTCAGCGCAATATCCCAAGGAGATTGGTGCCTTAGTTGGCAAAGAGGTGCTTTTCAGAGTTGAAGTGAAGCATGATGAGCTTATCAATTTGGATGACTCCTTCAAGGTCAAAAGTGTTTGTACTGATGCAACCATTATCAATCAGTACAAGGAAGATGTGGATGATGATACTCCTCTTAAGCTAAAATTTGCACCAGCATTTTCAAAGTTGGTTGATAATGAAAAGAAGAGTTGTATTGTAGACATTTCTCCTAACTCCTCTTCTGCTATAACTGAGGTTGATGTCACTCCAAAATCAACCGGACAATCATCATCAGCTGTGGAGACAAGCATGGTTTTAAGTAAGAGGGATGTTGAACCCTCTGTTGATGCTACAGAAGGCAGAAAGAAGCGGACCAAATTCAGGAATGTGAAGTTAGAGTAG 1479 0.4219 MALVSAGFHSISNVCGRKESWRLKVKVIRVWNMCAIATPDDPYALQMLLLDEEGGLIEGTVQKQNMQRFSSIIVEGRVYKLTNFNVVKNGGNFRASGHDHKILFTVNTKVICCENVSIQGMGFALKKTDEIMRTNGFSEYLLDFISILTAVSEEITLVKGGMEKRLVLLDLVDEMGEIRFAVFGDMVDAVLDNLSQAGCGFLVLIIQLARVNFYKVHEIETDVAVSVITPRPRPVSMTDEFLKLYPKKTVGELYELVEEGYFIIMATIMEVVHDGHWWYMACSCMRAVNYGRGMPFCDECKTIVYDLTQRYKIKLMVSDGNDNAHLIMWDSECYSLINRSCRDLLATSKGKGSAQYPKEIGALVGKEVLFRVEVKHDELINLDDSFKVKSVCTDATIINQYKEDVDDDTPLKLKFAPAFSKLVDNEKKSCIVDISPNSSSAITEVDVTPKSTGQSSSAVETSMVLSKRDVEPSVDATEGRKKRTKFRNVKLE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi164g00032 492 MobiDBLite consensus disorder prediction 445 492 - -
Sebi164g00032 492 Pfam Replication factor-A C terminal domain 261 398 IPR013955 -
Sebi164g00032 492 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Sebi164g00032 492 CDD RPA1_DBD_C 247 391 IPR047192 -
Sebi164g00032 492 Gene3D - 245 405 IPR012340 -
Sebi164g00032 492 Gene3D - 7 113 IPR012340 -
Sebi164g00032 492 MobiDBLite consensus disorder prediction 445 463 - -
Sebi164g00032 492 PANTHER OS03G0429900 PROTEIN 262 395 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi164g00032 492 CDD RPA1_DBD_A_like 22 110 - -
Sebi164g00032 492 Pfam Domain of unknown function DUF223 47 116 IPR003871 -
Sebi164g00032 492 SUPERFAMILY Nucleic acid-binding proteins 248 402 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi164g00032 Sebi-Chr164 1155571 1158195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi164g00032 21 399 Core DNA Replication Machinery Family AT5G45400 20.238 8.40e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi164g00032 - - lja:Lj6g3v0884310.1 281.952