Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi164g00029 ATGGCATCCAGTAATCCATTCTATGATGATATACGGAGCAGATCCGGGGTTGATCCTCCTCAAACTGAAGACTCAACAGAAATTAGTGAACTTGTGAATGATCCTACACAGACTGCTGTTAAACCTAATGGGACTGTTTCAAGTAGTGTTCGTGAACTTTTAGAGTGCCCTGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGTCATACATTATGCTCTGGTTGTAAACCTAGAGTCCATGACCGGTGCCCTACTTGTCGGCATGAGCTTGGCAATATCAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTAGAACTTCCCTGTAAATATCAAGAATGTGCTGTTATGGGTGATATACCTTTCCTAGTGGCCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGCACTTTTAATCATCGGTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTTAGTTGCTTCGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCATTTTTGCGGTTTATGGGGGATGATAATGAGGCAAAGAACTATACCTACAGTCTCGAGGTGGGTGGAAATGGGAGAAAGATGATTTGGCAGGGGGTGCCTAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAACATGGCTCTCTTCTTTTCCGGGGGTGACCGGAAGGAATTGAAACTACGAGTTACAGGGAGGATTTGGAAAGAACAATGA 819 0.4359 MASSNPFYDDIRSRSGVDPPQTEDSTEISELVNDPTQTAVKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQECAVMGDIPFLVAHLKDDHKVDMHNGCTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi164g00029 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 113 IPR013083 -
Sebi164g00029 272 Pfam Seven in absentia protein family 117 265 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sebi164g00029 272 CDD RING-HC_SIAHs 54 92 - -
Sebi164g00029 272 SUPERFAMILY RING/U-box 50 97 - -
Sebi164g00029 272 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 108 - -
Sebi164g00029 272 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Sebi164g00029 272 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 129 265 IPR008974 GO:0005515
Sebi164g00029 272 MobiDBLite consensus disorder prediction 1 28 - -
Sebi164g00029 272 FunFam E3 ubiquitin-protein ligase SINAT5-like 133 265 - -
Sebi164g00029 272 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 117 - -
Sebi164g00029 272 CDD Sina 138 266 - -
Sebi164g00029 272 SUPERFAMILY TRAF domain-like 112 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi164g00029 Sebi-Chr164 1074354 1076570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi164g00029 30 272 C3H Transcription Factor Family AT2G41980 67.870 5.54e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi164g00029 K04506 - gmx:100793457 526.168