Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi164g00004 ATGCTTTCTTATCCAAACTATTATAGGAAGACTCATGGAGCAAATAAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGCTGCAAGCTCCATTCCCGTGTGAGCGATTCTTCAAGGAGAAAACTCTTTGAACTTCATGAAATCTTCAAGACAGTACCTGGTGTAGGAAAACAGCAGAAGTTTATTAGTTCCAAGATAGTACCTATGGATAATAACACTTGCAGATCTGGGATTTGGGAGATATCTGATGATATTTTAACTAAAATTATAGCTTCCTTGGGCCCAATGGACCTCACTAAGGTTTCAGCAACGTGTCGTCATCTAAGATCCTTGGCTGCGTCAGTAATGCCTTGCACAAAGTTAAATCTGTATCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAACGAAATGCTGAACTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAACCTGGCTTGGGTAAGACTGTAACAGCTCTATCTCTTATTGTGAAGACGCAAAGTACATTGGCCAACCCACCAAATAGAGCACAAGTAGTCTGGTGTCAACATAATGGTAACAAGAAATGTGGCTATTATGAGATCAGTGGTAATAATAACGTTACTGGTTGTACTATCTCGGGTAAGAGGGATGTGTGCCAAGATACCAGTAGAAATAATGAGAACCATGATTACCCCTCCAAAAGAGCTAGATTGATGGATCCTGGTCAGAAAATCACTAAACTTCATGGTTCTTGTTCTGGAGAAGAAAACAAATCACCAGTAAATGCTAGCTTTGAGGAATCTATGCCTGCAAGTCGGTGCACTAGGAGCTTGAGTCGCATAAAAAAGAATCTAAATTTCACATATGAAGAAGAAGCCATGGTGTTTGATGGAAGAAAAGTCGGTGAAAGATCAATAAAAGCAAAGCAAGCATCAGATGTTGCATCCCATGGATCTGAAAACAAGCTAGTTGATACCTCACATGGATGTGGACAGAGTCACAAGTGGCCTAGGAAGCAAAAAGTTGATAGTTTAGAATACAACGATACATGGATTCAGTGTGATGCTTGTCGCAAGTGGCGAAAGCTTTCAGACAGTAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGTGTCCCTGAACAATATTTTCAGAATAGCTGGAAGATAACATACATGCCAGGATTTTACTTGAAAGGAACTTCTGGGGGTGACAAACAAAATGTTTCATTTTTCATTAGTGTGCTCAAGGAGCACTACTCATTGATAAATTCTCAGACTAGGAAAGCCCTTGCTTGGTTGGCTAAAATTTCAATGGACAAGCTTGCATTAATGGAAACAAATGGCATACGGGGTCCTATTTTAAACAATTGCACTGTGTCTAATGGGCATTTTAATCCATTCCACAAAATATTTCTAGCATTTGGCCTCATAAAGAGAGTTGAGAAAGGTGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGTGAGCCATTGGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACCTGGTTGATCATTGGAAATCACAAATTGAAAAGCATGTTAGGCCTGGTCAATTGCAGGTTTATGCTTGGACTGATCATCGGAAGCCATCTGCACACTGTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTAAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTCTGATGCAAGTGCACTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGTTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACGGCTACAAATCGATGGATACTAACAGGAACTCCAACACCTAACACCCCTAACAGCCAACTTTCACATCTACAACCTTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCTGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGTTGCATTTACTTCACAAATGCATGATTAGTGCAAGAAAAATAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTACTCACAGTTCGGCGTAATATATTGATGGCTGATTGGAACGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGCAGTGCAACTATAAAAAATGTTAGACTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATGCCTCCATAAGATACAATCTCCTGTTTGGTGGTCAATGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGGCATCTATTGTGCCTGGATTGTGTTTCAATAGACAATACGATGTGTACATATCCTGGCTGCGGTAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCAGGGTTGAAAGCTTTGCAAGGAACCAGTGAAGAGATGAGCTGCTATACAAATAATAGCAATGATGAGATGCATACCGAGAATAGTTTACCTTTGCATACGAGAGATGTGAAATCATCATTCCAGGAAGGTTCTATAAGGAGCACTAAGGCCAATTTTGTTCCTGAAAAAGTTCTGATATTTTCTCAATTTCTGGAACATATACATGTCATTGAACAGCAGTTGACTATTAATGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAGCCATGTTTCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGCTTTGTCACACATGTATTCTTAATGGAGCCAATTTGGGACAGAAGTATGGAAGAGCAAGTAATTAGTCGTGCCCATCGGATGGGTGCTTCTCGCCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCACATGCTAGAATTTTTACAGGATGCTGATAAATGTAGAAGATTTCCAAGTAAAGATGTTGACAAATCTGAAGATGATAGTGGGGGGCGTGGATATCGATCATTGCATGATTTTGCTGAAAGCAGTTATCTACAGCAACTTAGATATGTGTATACTAATTCGCAAACTCTTGAAGGGAAAAGGTAA 3489 0.405 MLSYPNYYRKTHGANKSIWNLSDCHVLGCKLHSRVSDSSRRKLFELHEIFKTVPGVGKQQKFISSKIVPMDNNTCRSGIWEISDDILTKIIASLGPMDLTKVSATCRHLRSLAASVMPCTKLNLYPHQQAAVEWMLHRERNAELLPHPLYVALSTDDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQSTLANPPNRAQVVWCQHNGNKKCGYYEISGNNNVTGCTISGKRDVCQDTSRNNENHDYPSKRARLMDPGQKITKLHGSCSGEENKSPVNASFEESMPASRCTRSLSRIKKNLNFTYEEEAMVFDGRKVGERSIKAKQASDVASHGSENKLVDTSHGCGQSHKWPRKQKVDSLEYNDTWIQCDACRKWRKLSDSSMANSSAAWFCSMNTDPLYQSCSVPEQYFQNSWKITYMPGFYLKGTSGGDKQNVSFFISVLKEHYSLINSQTRKALAWLAKISMDKLALMETNGIRGPILNNCTVSNGHFNPFHKIFLAFGLIKRVEKGVCRWYYPQNLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKSQIEKHVRPGQLQVYAWTDHRKPSAHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLTATNRWILTGTPTPNTPNSQLSHLQPLLRFLHEEAYGLNLKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYASIRYNLLFGGQCVRCKEWCRLPLITPCRHLLCLDCVSIDNTMCTYPGCGNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQAGLKALQGTSEEMSCYTNNSNDEMHTENSLPLHTRDVKSSFQEGSIRSTKANFVPEKVLIFSQFLEHIHVIEQQLTINGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEHMLEFLQDADKCRRFPSKDVDKSEDDSGGRGYRSLHDFAESSYLQQLRYVYTNSQTLEGKR 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi164g00004 1162 Gene3D - 545 740 IPR038718 -
Sebi164g00004 1162 SMART fbox_2 82 122 IPR001810 GO:0005515
Sebi164g00004 1162 SMART ultradead3 120 709 IPR014001 -
Sebi164g00004 1162 Pfam CW-type Zinc Finger 383 426 IPR011124 GO:0008270
Sebi164g00004 1162 Gene3D - 935 1142 IPR027417 -
Sebi164g00004 1162 MobiDBLite consensus disorder prediction 341 368 - -
Sebi164g00004 1162 Pfam F-box domain 82 116 IPR001810 GO:0005515
Sebi164g00004 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 977 1129 IPR001650 -
Sebi164g00004 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 735 IPR027417 -
Sebi164g00004 1162 SUPERFAMILY F-box domain 71 115 IPR036047 GO:0005515
Sebi164g00004 1162 SMART helicmild6 1001 1083 IPR001650 -
Sebi164g00004 1162 CDD F-box_SF 81 113 - -
Sebi164g00004 1162 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 85 1108 - -
Sebi164g00004 1162 CDD DEXDc_SHPRH-like 560 737 - -
Sebi164g00004 1162 MobiDBLite consensus disorder prediction 345 361 - -
Sebi164g00004 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 1127 IPR027417 -
Sebi164g00004 1162 CDD SF2_C_SNF 978 1093 - -
Sebi164g00004 1162 Pfam Helicase conserved C-terminal domain 986 1083 IPR001650 -
Sebi164g00004 1162 ProSiteProfiles Zinc finger CW-type profile. 378 429 IPR011124 GO:0008270
Sebi164g00004 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 696 IPR014001 -
Sebi164g00004 1162 Gene3D - 377 431 - -
Sebi164g00004 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 206 IPR027417 -
Sebi164g00004 1162 Pfam SNF2-related domain 127 794 IPR000330 GO:0005524|GO:0140658
Sebi164g00004 1162 ProSitePatterns Zinc finger RING-type signature. 874 883 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi164g00004 Sebi-Chr164 189133 193784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi164g00004 566 1103 RAD5 or RAD16-like Gene Family AT5G22750 26.125 3.22e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi164g00004 SNF2_N 7e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi164g00004 - - gmx:100803102 1945.63