Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi163g00053 ATGGAGGAGAGGTATGAGCCATTAAAGGACCTTGGTTCTGGTAATTTTGGAGTCGCTAGGTTGGCCAAAAACAAGAAGACTGGAGACCTTGTTGCAGTCAAATACATCGAGAGAGGGAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTCTTGCTGACCCCTACTCATTTAGCTATAGTCTTGGAGTATGCTTCAGGTGGTGAACTCTTTGAGAGGATATGCACTGCTGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGACTTGAAATTGGAAAACACTCTCTTGGATGGGAATCCATCCCCTCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGTCTGCTTTATTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCAAGGAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGTTAGTTGGTGCATACCCATTTGAAGATCCAGAAGACCCTAGAAATTTCAGAAAGACTATTGGGAGGATAATAGGTGTTCAGTACTCCATACCCGACTATGTTCGTGTTTCTGCTGAGTGTAGGAATCTTCTCTCTCGTATCTTTGTTGCTGATCCTGCCAAGAGGATCACCATCCCAGAGATAAAACAGAACCCTTGGTTTTTGAAGAATCTGCCTAAAGAGATCATTGAAGCTGAAAAAAAAGGTTATGTGGAAACAAAGAAGGACCAACCAAGCCAGAGTGTGGAAGAAATCATGAGGATAATACAAGAGGCAAGGGTACCAGGAAAAGAATCCAAAGCTGGTGGCAGTGGGCAAGCTAGCACTGGGTCATTGGACATTGAGGATGATGAGGAAATTGATGTCAGCGGTGACTATGAACATGTGTGA 1011 0.4263 MEERYEPLKDLGSGNFGVARLAKNKKTGDLVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSAECRNLLSRIFVADPAKRITIPEIKQNPWFLKNLPKEIIEAEKKGYVETKKDQPSQSVEEIMRIIQEARVPGKESKAGGSGQASTGSLDIEDDEEIDVSGDYEHV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi163g00053 336 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi163g00053 336 MobiDBLite consensus disorder prediction 300 336 - -
Sebi163g00053 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Sebi163g00053 336 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi163g00053 336 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Sebi163g00053 336 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Sebi163g00053 336 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Sebi163g00053 336 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Sebi163g00053 336 PANTHER SERINE/THREONINE KINASE 3 287 - -
Sebi163g00053 336 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi163g00053 336 CDD STKc_SnRK2 4 260 - -
Sebi163g00053 336 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Sebi163g00053 336 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi163g00053 Sebi-Chr163 1302307 1306415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi163g00053 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 44.086 1.74e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Sebi163g00053 Pkinase 4.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi163g00053 K14498 - gmx:100817713 639.032