Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi163g00033 ATGGAACTTAAACTTGGCCTCGTTTGTGTCATACTGCTCTTTCCTGTTCTGTGTAACGCCCAGGGATTTTTTACTAAATCTAGGGCATCCTATTATGGTACCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGGTTTGGTGACTATGGAAGGACTGTCAATGGTGGCAGTGTCACAGCCGTGTCTGCTAAGTTATGGAAGAATGGAGCTGGTTGTGGTTCATGCTATCAAGTTAGGTGCAAAATACCACAATTATGTGATGTCAATGGAGCATATGTGGTGGTAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGCGCCTTCTCAAAACTGGGACGTGACCAAGTTGCATCCGACAAGCTAAAGAAATATGGTGTATTAGATATTGAATACAAAAGAGTCCCATGCACATTCAAGGGCTATAACATCATGTTTCAGATCAATGAACACAGCAGTAATCCTGGCTACTTTGCTATTGCGGTTCTCTATGTAGGTGGGACATACGATGTCACTGCTGTTGAGATGTGGCAGAAAGAACACCACCAATGGGAGGCCCTGCGCAGGTCCTATGGCGCAGTGTTTGACTTTGCAAACCCACCAAGAGGTGAAATTCTCTTGAGGTTCCAAGTGAGTAGCAGTGCTGGACTTAAATGGGTGGTGTCTAAATTTCCAATCCCTGCAAATTGGAGGGCTGGAGCTACTTACACCACCAGTTTTTAA 738 0.4566 MELKLGLVCVILLFPVLCNAQGFFTKSRASYYGTPDGYGNPRGACGFGDYGRTVNGGSVTAVSAKLWKNGAGCGSCYQVRCKIPQLCDVNGAYVVVTDYGEGDRTDFILSPRAFSKLGRDQVASDKLKKYGVLDIEYKRVPCTFKGYNIMFQINEHSSNPGYFAIAVLYVGGTYDVTAVEMWQKEHHQWEALRRSYGAVFDFANPPRGEILLRFQVSSSAGLKWVVSKFPIPANWRAGATYTTSF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi163g00033 245 PANTHER EXPANSIN-B3 14 243 - -
Sebi163g00033 245 Pfam Lytic transglycolase 60 136 IPR009009 -
Sebi163g00033 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 243 IPR007117 -
Sebi163g00033 245 SUPERFAMILY PHL pollen allergen 149 242 IPR036749 -
Sebi163g00033 245 SUPERFAMILY Barwin-like endoglucanases 10 146 IPR036908 -
Sebi163g00033 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Sebi163g00033 245 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Sebi163g00033 245 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Sebi163g00033 245 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Sebi163g00033 245 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Sebi163g00033 245 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Sebi163g00033 245 SMART dpbb_1 59 137 IPR007112 -
Sebi163g00033 245 CDD DPBB_EXLB_N 25 142 - -
Sebi163g00033 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 147 IPR007112 -
Sebi163g00033 245 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Sebi163g00033 245 Gene3D - 16 142 IPR036908 -
Sebi163g00033 245 Gene3D - 143 244 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi163g00033 Sebi-Chr163 1044401 1045801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi163g00033 3 245 Expansin Gene Family AT4G17030 53.086 2.59e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi163g00033 - - vvo:131638174 417.157