Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi163g00032 ATGGAACTCAAACTTGGTCTCGTTTGTGTCATATTGCTCTTTCCTGTTCTGTGTAACGCCCAGGGAATTTTTACTAAATCTAGGGCATCCTATTATGGCACCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGCGGCTTTGGCGACTATGGAAGGATGGTCAATGGTGGCAGTGTCTCAGCCGTGTCTGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGCTTGCTATCAGGTAAGGTGTAAAATACCACAATTATGTGATGTAAATGGAGCATATGTGGTGGTGACAGATTATGGTGAGGGATACAGAACTGATTTCATCATGAGCCCACGTGGCTTCTCAAAATTGGGACGCAACCCAGCTGCATCTGACAAGCTGAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTTCCTTGCACATTCAAGGGCTATAACATCATGTTTCAGATCAATGAACATAGTAGTAACCCTGGTTACTTTGCTATTGCGGTTCTCTATGTAGGTGGGACATACGATGTCACTGCTGTTGAGTTGTGGCAGAACCGCAAATGGGAGCCCCTACGTAGGTCCTATGGGGGAGTGTTTGACTTTGCTAACCCACCAAGAGGTGAAATCCGCTTGAGGTTCCAAGTGAGTACCAATGCAGGGCTTAAGTGGGTCGTGCCTACAGTTCCAATCCCCGCGAATTGGAAGGCTGGAGCTACTTATACCACAAGTATTTAA 732 0.4631 MELKLGLVCVILLFPVLCNAQGIFTKSRASYYGTPDGYGNPRGACGFGDYGRMVNGGSVSAVSAKLWKNGAGCGACYQVRCKIPQLCDVNGAYVVVTDYGEGYRTDFIMSPRGFSKLGRNPAASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSSNPGYFAIAVLYVGGTYDVTAVELWQNRKWEPLRRSYGGVFDFANPPRGEIRLRFQVSTNAGLKWVVPTVPIPANWKAGATYTTSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi163g00032 243 Gene3D - 143 242 IPR036749 -
Sebi163g00032 243 Pfam Lytic transglycolase 60 137 IPR009009 -
Sebi163g00032 243 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Sebi163g00032 243 Pfam Expansin C-terminal domain 149 227 IPR007117 -
Sebi163g00032 243 Gene3D - 16 142 IPR036908 -
Sebi163g00032 243 PANTHER EXPANSIN-B3 14 242 - -
Sebi163g00032 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 241 IPR007117 -
Sebi163g00032 243 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Sebi163g00032 243 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Sebi163g00032 243 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Sebi163g00032 243 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Sebi163g00032 243 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Sebi163g00032 243 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Sebi163g00032 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 147 IPR007112 -
Sebi163g00032 243 CDD DPBB_EXLB_N 25 142 - -
Sebi163g00032 243 SUPERFAMILY PHL pollen allergen 149 240 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi163g00032 Sebi-Chr163 1036058 1037445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi163g00032 3 243 Expansin Gene Family AT4G17030 52.675 9.47e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi163g00032 - - vvo:131638174 396.741