Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi163g00030 ATGGCATGGCATGTGATGGTACAAGTAGGGGGTGCTTGTGGCTTTGGTGACTATGGAAAGACGGTTAATGGTGGCAGTGTCGCAGCTGTGTCAGCTAGGTTATGGAAGAATGGAGTTGGTTGTGGTGCATGCTATCAAGTTAGGTGTAAAATACCAAAATTATGCAATGTCAATGGAGCATATGTGGTGGTAACAGACTACGGTGAGGGAGATAAAACAGATTTCATCTTGAGTCCACAAGCTTTCTCAAGATTGGGACATGCAAATTTGAGCAAATATGGGGTGGTGGATATTGAATACAAAAGGGTCCCCTGTACATTCAGGGGCTATGACATCGTGTTTCAAGTACATGAAAGTAGCAAAATCCCTGACTACTTTGCTATAGTGGTTCTCTATGTAGGTGGAACATATGAAGTCACTGGCGTTGAGATGTGGCAGAGAGATCACCACCAGTGGGAGCCTCTACGTAGGACTTATGGGGCAGTGTTTGACTTTGCTAACCCATCGAGAGATGAAATCCGCTTAAGGTTCCAAGTGAGTCGCAATGTGGAGCTTAAATGGGTGGAGTCAAGGTTTGCAATACCAAGAGATTGGAAGGTTGGAGCTACTTATGCCACCAGGATTCAACCTTATTAG 636 0.4481 MAWHVMVQVGGACGFGDYGKTVNGGSVAAVSARLWKNGVGCGACYQVRCKIPKLCNVNGAYVVVTDYGEGDKTDFILSPQAFSRLGHANLSKYGVVDIEYKRVPCTFRGYDIVFQVHESSKIPDYFAIVVLYVGGTYEVTGVEMWQRDHHQWEPLRRTYGAVFDFANPSRDEIRLRFQVSRNVELKWVESRFAIPRDWKVGATYATRIQPY 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi163g00030 211 SUPERFAMILY Barwin-like endoglucanases 10 109 IPR036908 -
Sebi163g00030 211 Pfam Lytic transglycolase 28 100 IPR009009 -
Sebi163g00030 211 Pfam Expansin C-terminal domain 112 195 IPR007117 -
Sebi163g00030 211 Gene3D - 107 211 IPR036749 -
Sebi163g00030 211 SMART dpbb_1 27 100 IPR007112 -
Sebi163g00030 211 PRINTS Expansin/Lol pI family signature 9 27 IPR007118 GO:0005576
Sebi163g00030 211 PRINTS Expansin/Lol pI family signature 31 49 IPR007118 GO:0005576
Sebi163g00030 211 PRINTS Expansin/Lol pI family signature 93 109 IPR007118 GO:0005576
Sebi163g00030 211 PRINTS Expansin/Lol pI family signature 152 166 IPR007118 GO:0005576
Sebi163g00030 211 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Sebi163g00030 211 SUPERFAMILY PHL pollen allergen 112 205 IPR036749 -
Sebi163g00030 211 Gene3D - 4 106 IPR036908 -
Sebi163g00030 211 PANTHER EXPANSIN-B3 10 209 - -
Sebi163g00030 211 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 10 110 IPR007112 -
Sebi163g00030 211 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 124 206 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi163g00030 Sebi-Chr163 983735 985350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi163g00030 11 208 Expansin Gene Family AT4G17030 51.485 1.80e-76 228