Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi163g00023 ATGATGATGATTCAGGTTAGGTGCAAAATACCACAATTATGTGATTCCAATGGAGCAATTGTGGTGACAACAGGCAATGGTGAGGGATACAAAACAGACTTTATAATGAGTCCACGTGGCTTCTCAAGATTGGGACATAACCCAAATGCATCAGCAGAGTTGATCAAATATGGTACAGTAGATGTTGAATATAAACGGGTCTCATGTACATTTAATGGTTATAACATTAAGTTTCAGATCCAAGAAAGTAGCAGCAATCCTGGCTACTTTTCTATCGTGGTTCTCTATGTAGGTGGAACATATGACATTAATGCTATTGAGATGTGGCAGAGAGAAAACCAATGGCAACCCTTGCATAGGAACTATGGGGCAGTGTTTGACTATTCTAACCCACCAAGAGGTGATATCCACTTGAGGTTCAAATTGAGTGGTTTTAAGTCAGCTTGGTTTTCCGTCCCCAGTAACTGGAAGGCTGGAGATACTTATAGCACAAGTATTCTGCCTAATTAG 510 0.402 MMMIQVRCKIPQLCDSNGAIVVTTGNGEGYKTDFIMSPRGFSRLGHNPNASAELIKYGTVDVEYKRVSCTFNGYNIKFQIQESSSNPGYFSIVVLYVGGTYDINAIEMWQRENQWQPLHRNYGAVFDYSNPPRGDIHLRFKLSGFKSAWFSVPSNWKAGDTYSTSILPN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi163g00023 169 Pfam Expansin C-terminal domain 76 143 IPR007117 -
Sebi163g00023 169 Gene3D - 2 69 IPR036908 -
Sebi163g00023 169 SUPERFAMILY PHL pollen allergen 75 163 IPR036749 -
Sebi163g00023 169 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 88 164 IPR007117 -
Sebi163g00023 169 PANTHER EXPANSIN-B3 5 165 - -
Sebi163g00023 169 Gene3D - 70 165 IPR036749 -
Sebi163g00023 169 SUPERFAMILY Barwin-like endoglucanases 3 73 IPR036908 -
Sebi163g00023 169 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 74 IPR007112 -
Sebi163g00023 169 PRINTS Expansin/Lol pI family signature 57 73 IPR007118 GO:0005576
Sebi163g00023 169 PRINTS Expansin/Lol pI family signature 115 129 IPR007118 GO:0005576
Sebi163g00023 169 PRINTS Expansin/Lol pI family signature 150 164 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi163g00023 Sebi-Chr163 734540 735602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi163g00023 5 167 Expansin Gene Family AT4G17030 45.562 4.43e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi163g00023 - - vvo:131638174 216.083