Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi163g00018 ATGGGCAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAAGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAAATGTTGAGTATGAGGACCCGAAGGTTTCCAGGGTGAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAGCGAAAACTGAACCATGATAATGCTGCATCTGGAGGGCTCACCCCTGATTACAATCAAGGATTCCAAAAGGTTTTAGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATATCTAACTCAGAGAGCTGTGCTCAATTTGGTGGTACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCGAAAAAGAGGACATGTGCTGGTCGTCCAAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTATGTACTATCCTTCATGAACAACAGTCTTATTTTTCTGCTTCTTCTGAAGAGGATCTTCTTTTTGAAAGCGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTTATAAGGCATCCCAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTGATGAGTGAGGCATATTCATGTTCTGCTACCATTCCTATGCATAGTGATTGCAGTGGCATGAATTTCTCATCCCAGGGAGTTGAAAAGGTCAGAAACTCCGTTGGCTATACAATACCACAGGAGCAACTTGGAAGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCACCACTGCGCTCAATAGATTTGAATGATGTAGTCAACTATGAGGAGTTTTTGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCCAAACTTCCTGATAGCCTTAAAATCATGTTCGATAGCTGTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTCTTGGGGAAGGTGTATTTGATATCTCCTTGTTGGGGGCAAAACCTGAGGACTGCAAGATGTTGAAAAGGTTTGCATTATCTGATCTGTCAAAGTCAAAATGGGTTGAGCACTACCATTTTCTCAAGATGCAGAGATATAAAAATAAGCCTGGAAAATGCGTTGATCAGGGATCTACTGCTGTGGCATCAAGCAGTGCTGCAAATTTCAAGAGATACCGTGACAGCCAAAATCAAAACTCACCAGAACTGAAGATAACAATGAGGAGCCCCAAAAGGTTGATCATAAAAACTAGCTGTGAGGGCAAAGAAGTTGTAGAAGATGGCTCTAGCTTCAGCCCAAAAAGCCTATTTGCATTGCCTCGTGATGGTAGCTTGCGCGTGCTGGATTCTCTAAACTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGCTAGAAGTGCCATCTAATAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCTACTTTAAGCTCTGGTGCTCATGCCAGCACCAGTAGCAGCTCAGCATACTCACATGTTGCTCATCCTTAA 1629 0.4297 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVEYEDPKVSRVKSISLNKNKEVKLVKRKLNHDNAASGGLTPDYNQGFQKVLDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKHSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQCLMSEAYSCSATIPMHSDCSGMNFSSQGVEKVRNSVGYTIPQEQLGRDKSQLEKLEVLGNHDSPLRSIDLNDVVNYEEFLRNLTNEEQQQLLKYLPVVDTAKLPDSLKIMFDSCQFKENLTYFQQLLGEGVFDISLLGAKPEDCKMLKRFALSDLSKSKWVEHYHFLKMQRYKNKPGKCVDQGSTAVASSSAANFKRYRDSQNQNSPELKITMRSPKRLIIKTSCEGKEVVEDGSSFSPKSLFALPRDGSLRVLDSLNFVDESSDQDLLLEVPSNSSFPQAELLHPTLSSGAHASTSSSSAYSHVAHP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi163g00018 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Sebi163g00018 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 540 IPR044589 -
Sebi163g00018 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Sebi163g00018 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Sebi163g00018 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Sebi163g00018 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Sebi163g00018 542 MobiDBLite consensus disorder prediction 522 542 - -
Sebi163g00018 542 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Sebi163g00018 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Sebi163g00018 542 Gene3D - 284 392 IPR038108 -
Sebi163g00018 542 Pfam Asx homology domain 287 367 IPR028020 -
Sebi163g00018 542 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi163g00018 Sebi-Chr163 487636 493597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi163g00018 1 519 C2C2-Gata Transcription Factor Family AT4G17570 53.296 3.78e-155 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi163g00018 ASXH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi163g00018 - - gmx:100799745 843.573