Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi162g00048 ATGCCGAGCAGCTCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGTTAGGGAAGCCTGTGAAGGTGGAAGAGATACAAGTAGGCCCACCAAAAGCAACCGAAGTTCGAGTTAAGATGCTCTGTGCCAGTATTTGCCACACAGACATCTCAAGCACTCAAGGATTAAATGCTAATTTTCCTCTGGCACTTGGACATGAAGGGGTTGGTGTTATAGAGAGTGTTGGTGATCAAGTGAAAAATCTAAAAGAAGGGGATATGATAATTCCAACATACATAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTCTGACATATCCTATAAGAGTGACTGGCCTAATGCCAGATAACACTTCAAGGATGTCTATCCGAGGCCAGAGGCTATTCCATGTCTTAAGTTGTGCTACATGGTCAGAGTACATGGTTACTGATGCTAACTACCTTTTCAAAGTTGATCCAAGCATTGATCCAGCCTATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTCTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTAGCTGTTTTTGGTCTTGGAGCTGCTATATGTGCAGCCAAGATGATGGGAGCAACTAGGATAATTGGAATTGACATAAATGAGATGAAGAGAGGAAAAGGAGAAGCTTTTGGAATGACTGACTTTATAAATCCTGGTGATTCTGTTAAATCTGCTTCACAATTGGTCAAGGAAATGAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCCCCTTTGCTCACTGAATCTGTGAAAGCCACAAAAGTGGGAACAGGAAAAACAATAGCAGTTGGTGCTGGAACTGAACCTATTGTGCCATTTGGACATTCTGCCATCCTGTGTGGAAGAACTCTGAAAGGCTCTATTTTTGGAGGATTAAAACCAAAATCAGACCTTTCCATTGTAACTAAAAGATGTCAGAATGGGGATTTCCCTCTTGGAGAACTATTCACCCATGAGGTCCCATTGGCAGATATAAACAAAGCATTTGAGCTATTGAAACAACCCAACTGTGTGAAAGTTGTCATCAAGATGTGA 1110 0.4225 MPSSSQVITCKAAICWGLGKPVKVEEIQVGPPKATEVRVKMLCASICHTDISSTQGLNANFPLALGHEGVGVIESVGDQVKNLKEGDMIIPTYIGECQECENCVSGKTNLCLTYPIRVTGLMPDNTSRMSIRGQRLFHVLSCATWSEYMVTDANYLFKVDPSIDPAYASFISCGFSTGLGAAWKEAKVESGSSVAVFGLGAAICAAKMMGATRIIGIDINEMKRGKGEAFGMTDFINPGDSVKSASQLVKEMSGGMGVDYSFECTGVAPLLTESVKATKVGTGKTIAVGAGTEPIVPFGHSAILCGRTLKGSIFGGLKPKSDLSIVTKRCQNGDFPLGELFTHEVPLADINKAFELLKQPNCVKVVIKM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi162g00048 369 Gene3D - 178 312 - -
Sebi162g00048 369 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Sebi162g00048 369 SUPERFAMILY GroES-like 4 189 IPR011032 -
Sebi162g00048 369 PANTHER ALCOHOL DEHYDROGENASE 6 361 - -
Sebi162g00048 369 SUPERFAMILY GroES-like 321 367 IPR011032 -
Sebi162g00048 369 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Sebi162g00048 369 Pfam Zinc-binding dehydrogenase 201 316 IPR013149 -
Sebi162g00048 369 Gene3D - 14 364 - -
Sebi162g00048 369 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 312 - -
Sebi162g00048 369 FunFam alcohol dehydrogenase 1-like isoform X1 18 177 - -
Sebi162g00048 369 CDD liver_alcohol_DH_like 8 368 - -
Sebi162g00048 369 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 333 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi162g00048 Sebi-Chr162 1244672 1247068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi162g00048 35 361 Monolignol Biosynthesis Gene Families AT2G21730 25.298 2.07e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi162g00048 K00121 - gmx:100798341 629.017