Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi162g00028 ATGGGGAGAACACCATGCTGTGATGAGAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTTGCAGGACTCAACAGGTGTGGCAAGAGTTGCAGGCTAAGATGGACTAACTATTTAAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAACAACTCATCATCAATTTACATTCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATTTGCCAGGGAGGACTGATAATGAAATCAAGAACTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTGGATCATCTTAATCTTTTATCCAATCTCCAACAATTGCTGGATGCTACAAACATTGTCAATAGTTTGAGTTTAACAAACACTTGGGACATGAATGCTCTGAGGCTGCAATCAGATGCAACACAATTAGCCAAACTCCAATTGCTGCAGAACATGCTTCAAGTCCTTTCTGGTGCCACTACTCCTAACACAAATTTGGAGTTACTCAATCCATTTGGACCATCATCCTCACTTCAAGAAAATTTTCTGCATGAACTCATGGGATTGAATCAGTCTAAGCTCCAAAGCCTTTACAATAGTTCAACTAGTTTTCCTTCTCAAAATCAGCCAAATTTTCAAGGCTTTGAAGCCCTGCAGCAGCCAGCTCTGTCCACTGAGCATCATCACATGAATGGTAGTGGCAGCAGCATTAGTAGTTGCATGAAGTCTCTAAAGGTTGATGAGAAACTTAATGCCACAATGAATTCTTCATCAACACCATTGAATTCACTTCCAAATCTGGTTTCAGCATCACCTGAATGTTCCAAGGTAAACCAAATGAGTGTTCCAATCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAA 996 0.4096 MGRTPCCDESGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHSVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNLLSNLQQLLDATNIVNSLSLTNTWDMNALRLQSDATQLAKLQLLQNMLQVLSGATTPNTNLELLNPFGPSSSLQENFLHELMGLNQSKLQSLYNSSTSFPSQNQPNFQGFEALQQPALSTEHHHMNGSGSSISSCMKSLKVDEKLNATMNSSSTPLNSLPNLVSASPECSKVNQMSVPILLPLQPPLKCGEISCMRK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi162g00028 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi162g00028 331 CDD SANT 69 112 IPR001005 -
Sebi162g00028 331 SMART sant 66 114 IPR001005 -
Sebi162g00028 331 SMART sant 13 63 IPR001005 -
Sebi162g00028 331 CDD SANT 16 61 IPR001005 -
Sebi162g00028 331 FunFam Transcription factor MYB39 69 130 - -
Sebi162g00028 331 Gene3D - 69 116 - -
Sebi162g00028 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi162g00028 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sebi162g00028 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi162g00028 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi162g00028 331 FunFam MYB-related transcription factor 13 66 - -
Sebi162g00028 331 Gene3D - 13 66 - -
Sebi162g00028 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi162g00028 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
Sebi162g00028 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi162g00028 Sebi-Chr162 693126 694381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi162g00028 1 242 MYB Transcription Factor Family AT5G16770 61.832 6.76e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi162g00028 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi162g00028 K09422 - gmx:547488 446.047