Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi161g00110 ATGTCATTCAAAAGCATAGTAAGGGAACTCAAGGAGATGAGAGATGGGATTGGTAGCACATCAAGGCGAGGTGCAGGAAGCAGGCATTGGCACAGTCGGGCAAAGTCACACATTGTTCCTGATATCACTCTAGCTCCAATTGAACCTATTCAGCAGGGACAATGGGCAAATCTACCATCTGAATTGCTTCTGGACATAGTCAGGAGGGTTGAAGAGAGTGAGACGTCTTGGCCTGCACGGGCTATAGTTGTTTCTTGTGCTTCAGTATGTAAATCATGGCGAGCCGTTACAAAAGAGATAGTCAAGACTCCTGAGCAATGTGGGAGGCTCACATTTCCTATCTCATTAAAGCAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATTTATTGTACTTTGGACTGGTGCCATCGGAGAATGAGAATGATAAACTCTTATTAGCTGCCAAAAAGATAAGAAGGGCAACAGGCACAGACTTTATTATATCTTTGGTTGCAGATGATTTTTCTCGGTCTAATTTTTTGGGTACGAAGTTCACTGTATATGACAGCCAACCTCCACATGGAGCTGAAATTCAATCAAACAGTCGGTCTAGTAGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACACGAGGGCCAAGAAGAATGCACTGCACCATGAATTCCATTCCTATCTCAGCCATTCAGGAAGGGGGCAATGCTCCAACACCTACGTCTTTTCCTGAAACCATTGTTGAACATTTTTCTCCCTCACCAGCAGTGAAAGGAAAAGATCCAATTGGTGATTTAAACAATGCAACCCTCCAAGAGCTACCAGTACAGAGCCAAGGCCCATTTGAGCCTTTGGTACTTAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAATTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTACCGATATCCACTATCTGCCTTCCAAGCCTTTGCCATATGCTTGAGCAGCTTTGATACGAAACCAGCCTGTGAATGA 1215 0.4412 MSFKSIVRELKEMRDGIGSTSRRGAGSRHWHSRAKSHIVPDITLAPIEPIQQGQWANLPSELLLDIVRRVEESETSWPARAIVVSCASVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYFGLVPSENENDKLLLAAKKIRRATGTDFIISLVADDFSRSNFLGTKFTVYDSQPPHGAEIQSNSRSSRRFHSKQVSPRVPACNYVVSTIAYELNVLRTRGPRRMHCTMNSIPISAIQEGGNAPTPTSFPETIVEHFSPSPAVKGKDPIGDLNNATLQELPVQSQGPFEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi161g00110 404 Gene3D Tubby Protein; Chain A 113 404 IPR025659 -
Sebi161g00110 404 Gene3D - 48 103 - -
Sebi161g00110 404 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Sebi161g00110 404 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Sebi161g00110 404 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Sebi161g00110 404 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Sebi161g00110 404 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Sebi161g00110 404 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Sebi161g00110 404 CDD F-box_AtTLP-like 55 99 - -
Sebi161g00110 404 MobiDBLite consensus disorder prediction 195 215 - -
Sebi161g00110 404 SUPERFAMILY Tubby C-terminal domain-like 104 404 IPR025659 -
Sebi161g00110 404 Pfam F-box domain 55 102 IPR001810 GO:0005515
Sebi161g00110 404 ProSitePatterns Tub family signature 1. 332 345 IPR018066 -
Sebi161g00110 404 Pfam Tub family 116 399 IPR000007 -
Sebi161g00110 404 ProSitePatterns Tub family signature 2. 389 404 IPR018066 -
Sebi161g00110 404 PANTHER TUBBY-RELATED 50 402 - -
Sebi161g00110 404 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Sebi161g00110 404 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi161g00110 Sebi-Chr161 1588122 1590083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi161g00110 1 404 TUB Transcription Factor Family AT2G18280 62.892 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi161g00110 Tub 1.5e-97 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi161g00110 K19600 - gmx:100778290 713.761