Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi161g00109 ATGACACTCCTCTTAATGAAAACCGATAGTGGTGAAGAAGCGGATTCGTTACCGAATCCCCGAACCTTTAAGGTACATAGTAAAATGTGTATAGAACTCATGAAATTAGTAGACAGTATCTCACGGATACTTCCTGACATAGAGAGAGCACGACCACGAAGCTCATTGGGAATAGAGTCTCTGTGTCTGCTGAATAACGCAATTGATAAAGCCAAGCTACTTCTGCAACATTGCTCCGAAAGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTCAAGATGCCAAAAGGCAACAAGGTCAATAGAGCAAAGCTTAGTCCCCATTCAGGGTATGGTTCCAGTTATGCTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCTACATTTGTTCTGGACCCTGCTGAAGAAGATGCTGGGAGGGTTGTGAAAGAGTTGTTTCAGCAAGGCACTTCAACCTCAGATTCAGTGGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCACCAAGACTGAATATAACATCCCGAAAGGCCATCATAATAGAGAGTCGATCTATCAAGAAGTTGCTTGATAAAGTTGGACCAAATGACCAGAAAAAGAAGATGATATTGAGGTATCTTCTGTATCTACTGAAAAAGCATGGAAACTCCATCGTGGGAGAACAAATGGAGGTCTATTCTCGTAGTGAAGAACCGATTGCAACCGAGAACTCTGGTCATGATTCTCTAAGAAGCCATCATGTTGAGTCAGATCCTTGCTTGAACTATGGTCATTATAGAACTCACCCCAGTGAGTTTGATAGAGCTACACCCCCTGAGGAATACAAGTGCCCCATATCATCAAGGTTGATGTATGATCCTGTTATCATTGCTTCCGGAGTAACATATGAAAGGATGTGGATAAGAAGGTGGTTTGATGAGGGTAAAACCACATGCCCAAAAACCAACAAGAAATTAGTCCATATGGCAATGACTCCGAATGTTGTCATGAAGGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTCACCATTCCTGACCCGACTAGGCAAGCAGAAGATTTTAACTCATTGGATGCTTCAATCACTTCCATTAAGAGTTTTGCAAGTTATTTCAATGATTTGAACTTGCCAGTGGATCTTAGTAACATTTCACTTGGGTCATTGGACACTAGTTATAGTTCAGATGCCTCACGTGTTAAGAACATTGTTAAGACCACTCATGATTCAAACTTGATGTTGATCAAGAGTAGGAACAATTCTCACAAGCATCAAGCACATGCGGAGATACATGATACAGATTTGATGCTCTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAAGACATGAAAGATCATTTGAAAAGCAATGGCCAAGGTTTTTTCTCTCTGTCATCTGAGAATTTCATTGAACCACTAATCAGATTTCTGAGCAATGCATATGATCGGCATGACATAAAAGCTCTGAGAGCTGGAACTCAGCTTCTATTGGAACTTGTGAACAACTGCAGAGATGGTATGGCTGATTTAGGAGAAGATACATTCATTACATTAGCAAGTTTTCTTGATTCAGAAGTGACTGGAGAAGTTCTTACCATAATGGAAGAACTGTCTGGGTATGGGTATAGCAAAGCCAAGATTGCAGCATCCAGTGCACTCACTTCTGTTTTGAAAATACTTGATTCTGATAACAAAGGGTTCCAACAACAAGCCATTAGAATAATGTACAATTTGTCCTTCAATGGTGAAGTTTGTCCCCACTTGCTATCTCTCAAGTGCATCCCAAAATTGCTACCATTTTTCAAAGACAGGGCTGTTTTGAGATACTGCATATATATATTGAAAAATCTCTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGATGCATATCTTGTGTTGCTGAAATACTTGAGACAGGCAGTAATGAGGAACAAGAACATGCACTGGCTGTTCTAGTATCTTTATGCTCTCAACGTGTGGATTATTGTAAGTTGGTTATGGATGAGGATATTATCACTCCTCTTTTCTTTGTCTCCCAGAATGGAAATGATAAAGGAAAGGCAAGTGCATTGGAACTGCTCCATCTTTTGACGGATACTAAACATGTTGAGAATGAAGTTTGCTCTGAACCAAATACTATCAAGAACACTTCTCGAGATTCCAACAACAGTCACCCTGAAGAAAATAAATCATCAAAGGGTTCTACATTTTTCAAGAAGATATCATGGTTCTCAAATGGCAGTTCACATGCATCAAAAACCAAAAGGTGA 2319 0.401 MTLLLMKTDSGEEADSLPNPRTFKVHSKMCIELMKLVDSISRILPDIERARPRSSLGIESLCLLNNAIDKAKLLLQHCSESSKLYLAVTGDTVLSRCQKATRSIEQSLVPIQGMVPVMLAVEVSRIIDDLECATFVLDPAEEDAGRVVKELFQQGTSTSDSVDDSEVKALQFAAPRLNITSRKAIIIESRSIKKLLDKVGPNDQKKKMILRYLLYLLKKHGNSIVGEQMEVYSRSEEPIATENSGHDSLRSHHVESDPCLNYGHYRTHPSEFDRATPPEEYKCPISSRLMYDPVIIASGVTYERMWIRRWFDEGKTTCPKTNKKLVHMAMTPNVVMKDLISKWCRNNGVTIPDPTRQAEDFNSLDASITSIKSFASYFNDLNLPVDLSNISLGSLDTSYSSDASRVKNIVKTTHDSNLMLIKSRNNSHKHQAHAEIHDTDLMLLPKLHDLQWDSQCKVIEDMKDHLKSNGQGFFSLSSENFIEPLIRFLSNAYDRHDIKALRAGTQLLLELVNNCRDGMADLGEDTFITLASFLDSEVTGEVLTIMEELSGYGYSKAKIAASSALTSVLKILDSDNKGFQQQAIRIMYNLSFNGEVCPHLLSLKCIPKLLPFFKDRAVLRYCIYILKNLCDTEEGRNSVAETKGCISCVAEILETGSNEEQEHALAVLVSLCSQRVDYCKLVMDEDIITPLFFVSQNGNDKGKASALELLHLLTDTKHVENEVCSEPNTIKNTSRDSNNSHPEENKSSKGSTFFKKISWFSNGSSHASKTKR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi161g00109 772 MobiDBLite consensus disorder prediction 725 750 - -
Sebi161g00109 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Sebi161g00109 772 PANTHER U BOX DOMAIN-CONTAINING 30 720 - -
Sebi161g00109 772 SUPERFAMILY RING/U-box 267 354 - -
Sebi161g00109 772 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Sebi161g00109 772 SUPERFAMILY ARM repeat 443 716 IPR016024 -
Sebi161g00109 772 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Sebi161g00109 772 Gene3D - 467 733 IPR011989 -
Sebi161g00109 772 CDD RING-Ubox_PUB 278 327 IPR045210 -
Sebi161g00109 772 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi161g00109 Sebi-Chr161 1583382 1586629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi161g00109 20 754 U-box Gene Family AT4G36550 38.564 1.60e-152 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi161g00109 - - gmx:100791627 1121.3