Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi161g00056 ATGGCGAGTGGTTTTGGTGAATCAACGAGAGCGTCTTCTCCGAGCCCATCCTGCTCGGGGAACAGTCCCAACGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTGGCTCAAGATCCAGTGATCACTCTCTGTGGTCATCTATTTTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCACTCCCATTCACAAGAGTGCCCCGTTTGCAAGGCCCTCGTTCAGGAAGAGAAATTGAGGCCCCAAACGGCGCCACCCCCTCCTCCTCCTGAAGCCAATCCATTTGGGAATTATGGGTTTGGGTTGATGGGGGGATTCATTCCCATGGCTACAGCTAGGATTGGAAACTTCACGCTTTCCACTGCTTTTGGGGGTTTTATCCCATCTCTGCTCAACATTCACTTCCATGGCTTCCAGGATGCCACTGTCTATGGGACAACGTCTGGTTATCCCTTTGGGGGGTTTAACACGTATAATGGCGGGAACTCACGAGGTTTTTCACAGGCTACTGGTCAAGTGCAGCGGCAAGAGGACAATGTTTTGAAGAACCTGCTTTTGTTGATTGGATTTCTTGTTCTTCTTACGGTCATTTTTGTATGGTAA 606 0.4901 MASGFGESTRASSPSPSCSGNSPNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLRPQTAPPPPPPEANPFGNYGFGLMGGFIPMATARIGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGGFNTYNGGNSRGFSQATGQVQRQEDNVLKNLLLLIGFLVLLTVIFVW 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi161g00056 201 MobiDBLite consensus disorder prediction 1 21 - -
Sebi161g00056 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 82 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi161g00056 201 SMART ring_2 31 71 IPR001841 -
Sebi161g00056 201 SUPERFAMILY RING/U-box 27 84 - -
Sebi161g00056 201 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Sebi161g00056 201 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Sebi161g00056 201 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Sebi161g00056 201 CDD RING-HC_AtRMA-like 29 73 - -
Sebi161g00056 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi161g00056 Sebi-Chr161 892672 893366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi161g00056 21 199 C3H Transcription Factor Family AT2G23780 51.643 8.21e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi161g00056 K10666 - gmx:100814783 359.377