Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi161g00046 ATGGCCCTGGCCGAATTATCCACAGAACAGGTTCTGATGAGGGACATCCCATGGGAGACCTACATGTCCACTAAGCTGATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCATCGATCAGAAAGTCACAGAGCACAGTTGCTGGATGATGATGGTCCAGCTTATGTTCGTGTATTCGTTCGTGTTTTGTGTGATATTTTCAAAGAAGAGACTGTAGAATATGTTTTAGCATTGATAGATGAAATGCTCGCAGCGAATCCGAAAAGAGCAAAACTGTTTCATGATAAGACCCTCTCAGATGAAGACACTTACGAACCCTTCCTAACTCACTTCTCATGCTATACATTGCTTCAGAAAGGAAATTGGTTCATACAGGAGAAAAGTTGTAAGATCCTTAGTTTAATAGCTAGTGCCAGGCCAAAAGATCAAAAGGGCAGTGTTGCAAATGGAGAAACATCAAACTCAAAGAAACCATTTACCGCCATTGATGACACTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGCTGAAGAAACCCTCTCATCCTACTCGGGGTGTCCCAACCGCTATCAATTGCCTAGCAACTCTACTTAAGGAACCTGTGGTTAGGTCTACCTTTGTTCAAATGGATGGGATCAAGTTGCTCATACCTTTAATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACTTGTCTCTGCATATGGCTCCTATCCTATTATGAGCCGGCCATTGAATACCTGGCCACTTCAAGAACCCTTCCACGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTGATTGCCTCAACCCTTAAGAACTTGTTGTCAAAAGGGACATTGGGTGCTCAAATGGTTGATCTTCAACTACCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCATTGAATTGCCTGGAAGAAGGGCTAAAGGATAACATTAAGAAACTAAGTTCTTATGATATGTATAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGACTCCTGTGCACAAAGATCCTATATTTTGGCGAGAAAATATTACCAACTTCGAAGAGAATGATTTCCAGATTTTGAGGGTCCTAATAACAATTTTGGACACATCAAGTGATCCAAGGACTCTGGCCGTTGCTTGTTTTGATCTTTCACAGTTCATCCAACACCATCCTGCTGGGCGTATCATTGTGACTGACCTTAAAGCCAAGGAACGAGCAATGAAATTAATGAATCACGAGAATGCTGAAGTTACTAAAAATGCGCTCCTCTGCATCCAACGGCTTCTCTTAGGTGCGAAATATGCCAGCTTCCTGCAGGCCTAG 1377 0.4241 MALAELSTEQVLMRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFVRVLCDIFKEETVEYVLALIDEMLAANPKRAKLFHDKTLSDEDTYEPFLTHFSCYTLLQKGNWFIQEKSCKILSLIASARPKDQKGSVANGETSNSKKPFTAIDDTLIGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPVVRSTFVQMDGIKLLIPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVIASTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNCLEEGLKDNIKKLSSYDMYKQEVLLGHLDWTPVHKDPIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFIQHHPAGRIIVTDLKAKERAMKLMNHENAEVTKNALLCIQRLLLGAKYASFLQA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi161g00046 458 Gene3D - 2 337 IPR011989 -
Sebi161g00046 458 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 4 457 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sebi161g00046 458 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 404 411 IPR018506 GO:0020037
Sebi161g00046 458 FunFam V-type proton ATPase subunit H 349 450 - -
Sebi161g00046 458 Pfam V-ATPase subunit H 6 329 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sebi161g00046 458 Pfam V-ATPase subunit H 335 448 IPR011987 GO:0000221|GO:1902600
Sebi161g00046 458 SMART arm_5 408 448 IPR000225 GO:0005515
Sebi161g00046 458 SMART arm_5 201 246 IPR000225 GO:0005515
Sebi161g00046 458 SMART arm_5 247 288 IPR000225 GO:0005515
Sebi161g00046 458 SUPERFAMILY ARM repeat 8 448 IPR016024 -
Sebi161g00046 458 PIRSF V-ATP_synth_H 1 457 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sebi161g00046 458 Gene3D - 349 450 IPR038497 -
Sebi161g00046 458 Coils Coil 418 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi161g00046 Sebi-Chr161 747753 753697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi161g00046 1 458 Primary Pumps ATPases(2) AT3G42050 76.201 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi161g00046 K02144 - gmx:100796479 796.193