Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi161g00043 ATGGAAGTACTTCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCGGAGTTCAGGAACAGCTTTTGTATGCCAGGAAGAACCTAATTGCCCCGAAAATGGTGAACAAGCTAAATTGGCAGATGGTCAACTGATTGAATCATCAGATAACATGCAAGGGCCGCATATAGAAAGCCAGGGTGAAGGGAAACAGACTGTTTGTAATTTGTTGGCTAATTCAGATTGTCAATGCATTGGAGCTTCATGTAGTGACTGTCAAGTGGAAGATCAAAAGGAATACTGTGGTTTCCATGATTTTGAAGATGACGTGATAAATGGACCTTGCTTAACCTCTGAGAACTCTCTCTCTGTTGTGGATACCATTGAAAGTGAATCACCAAACAATAGTAGGGAAGGAGACTTGTCATTTTCTGAACCCAAGTGGCTAGAGGGGGATGGATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAAGCTGGTATCCGATGTTCAAGGGCTGACTGGCCGTTATCAACTTTGAAAGCAAAACCAACTCATGACCGAAAGAAATATTTTGTCATATTTTTTCCACACACAAGGATTTATTCTTGGGCAGATATGCTGCTTGTTAGATCAATCAATGAGTTTCCCCATCCAATTGCATACAAGACTCATCAGGTAGGATTGAAAATGGTAAAAGACTTAACAGTTGCACGGCGGTTTATAATGCAAAAGCTAGCTGTTGGCATGCTGAACATTGTCGATCAGTTTCATTTTAATGCTTTGACAGAAACTGCCCGTGATGTGAAAGTCTGGAAGGGTTTTGCTATGGAGGCTTCTCTTTGCAATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGCTACATAATAGCATACTGCAGCACTACATAAATGCTAACTGGTTGCACCACTCTTCTCATTCTTGGGTTGAACGATGTCAGAGTGCAAATAGCGCCGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGATGGACCTGTGCAACCAATGTTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTTGACTTCCCCTTCCTTATCTAGCAGCAAAGGCACACAGCAGCAGATTTCTGATGATTCATACCAAACAAACCTTCAGGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGAAACACATTCTTCACAAGTGGAAATCAAGGGTTCAGATCACTCTATTACTCTTGAGACTGACCCTCTCTTCTTTAAGAATCAGGACACATTGAGCACATTAGCAGCTGAGACTTGTAATAAACAGGAAGATGTTAGGGAGGTATCTTTGGCAACTGATTTTCCTAGTAACTTAACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGCATACCAAAGGAATGGAATTGACACCTATAAATGAAATGGCTGTTGCAAAATCTGTAGAACCTGGTAGTAAAAATCGACAGTGTATAGCTTATATTGAATCCAAAGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTGCATTTGTCATCCCGTTTTTTGGGCAGCTCTTCAAAAGCTGAAAAGCCAGTTCCAGTTGATACTCCTATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCACCGTGCCCTACCTGGTTCTTTATTCTGTAAGAAACACCGGCCCCATGCTGAAACAGAACAGATCTCGAGTTTACCCCAGAATATACTAAAGAGGAAACATGAAGAAAATTATACTGGTTCAGAGGACATGTTCTGCAAAGACCTGGTATTAGTAGATGTTGAAGGTCCACTGCAAGTGGATCCAGTGTCATCCATTGCTGGTGATACCTTACATGGAGAAAGCAACTTATCTGAGAAGCTCGTGCATTCTGAAAATGATCATAGTGTAATGGAGGCACTGAACTGCATAGGTTCTCCTCCCTACGATAATAGGAATCCTTGTACGGAAGCTCCTAAACGTTATTGCTTGTACTGTGAAAGACACCTTCCGAGCTGGCTTAAACGTGCAAGAAATGGGAAAAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCATGGGAGCAAAAGTGGGCTTTGGCTGAAGCCTCTAAAGATACTAGTGTTGGAGAATTTTTTACGAAGTTGGTTCATCGTGAAAAAGCGAGAATCAAATTGATGTGGGGATTCAATGATGACATAGATCTATCCTCTGTCATGGAAGAACAACCTCTCTTGCCATCCACAATTAATGATAGCTTTGATAATGAAAATGCCATTAAGTGTAAGATATGCTCAGCAGAATTTCCTGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTATTTAGAGGTTATGCATGTGCTATTTGTTTGGATTCTTTTACTAACAAGAAACTGTTAGAAACTCATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGTAGTCATTTTGGAAATGCTGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAGCCATCAAAAGCTCCTGAGCAGCAAACTTTGTCTACTGGCGAAGATTCACCAGTAAAACATGACCAGGGAAATTCAGCCTCTTTGGAAAATAATTCTGAGAATGCAGGTGGTTCACGGAAGTTTGTTTGCAGGTTCTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGTAGACATCACCAAGCTGCTCATATGGGACCCAATCTGGCTAGCAGCCGCCCTGCTAAGAGGGGAGTTCGGTATTATGCATACAAACTAAAATCTGGTAGACTTAGCCGCCCTAGATTTAAAAAAGGTTTAGCAGCTGTATCATACAGGATGAGAAATAAGGCTAATGCTAATTTAAAGCGATGTATTCAGGCAACAAACTCACTTGGAGGGGAAGGAAAAACTGTACAGCCTCAACTAACGGAAACAACAAATATCAGTGGATTGACAGAACATCAATGTTCAGCTGTTGCGAAAATTTTGTTTTCAGAGATTCAGAAAACAAAACCTCGGCCTAACAATCTTGATGTTATATCAATTGCTCGCTCTGCTTGCTGCAGAATTAGTCTTGCAGCCTCACTGGAGGAGAAATATGGAATTCTGCCTAAAAAGTTGTATTTGAAGGCAGCAAAACTGTGCAGCGAGCATAACATTGTTGTGAATTGGCACCAGGAGGGGTTTGTTTGTCCTAGAGGTTGTAATATGTTGAAGGATCAAGCATTGCTCTCTCCTTTAGCATCTCTTCCTAATGGTTCTGTAATGCCAAAATCTGTAAATATATCTGATCCTGCAAGTGATGAGTGGGAGGTGGATGAGTTTCACTGCATCATCAGTTCACCTAGTTTAAAATTTGGTTCACTGCAAAAGGCTATAGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGATATGTGTGGTAGATCAAGAACTTTTGCATTCTCTACATACGCAGAGGTCTAATGAACAAGATTTGGACTCTTCTAAACCTTGGGAGAGCTTTACCTATATTACAAAGCCAATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTAGGATGTGCTTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTAATGACTATGTTGATGCTAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATGATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACCATATGTGCAGGTGCAATAAATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAACTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCGTTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATGTGCAGGAAGCGCACAACAGGCACAAGAGATATGGCACAGGGAATTGCAGTTATTTCTATGACATCAATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGGCAGGCCCAATATGTAATTGATGCTACTAAATATGGAAATGTGTCAAGGTTCATCAATCATAGTTGCTCGTCCAATCTTGTCAGTCACCAAGTTCTCATAGAGAGCATGGATTGTGAGCGTACACATATTGGTCTTTATGCAAGTCGAGATATTTCTTTGGGTGAAGAGCTGACATATGACTATCAGTATGAGCTTGTGCCTGGAGAAGGATATCCTTGTCTTTGTGAATCATCCAAATGTAGGGGACGCCTTTACTAG 4425 0.4115 MEVLPCSGVQYAGESDCPQRSSGTAFVCQEEPNCPENGEQAKLADGQLIESSDNMQGPHIESQGEGKQTVCNLLANSDCQCIGASCSDCQVEDQKEYCGFHDFEDDVINGPCLTSENSLSVVDTIESESPNNSREGDLSFSEPKWLEGDGSVALWVKWRGKWQAGIRCSRADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWADMLLVRSINEFPHPIAYKTHQVGLKMVKDLTVARRFIMQKLAVGMLNIVDQFHFNALTETARDVKVWKGFAMEASLCNGYSDFGRMLLKLHNSILQHYINANWLHHSSHSWVERCQSANSAESVELLKEELFDSILWNDVNTLWDGPVQPMLGSEWKTWKHDVMKWFLTSPSLSSSKGTQQQISDDSYQTNLQVCRKRPKLEVRRAETHSSQVEIKGSDHSITLETDPLFFKNQDTLSTLAAETCNKQEDVREVSLATDFPSNLTNKWNEIVVEAADSDFLHTKGMELTPINEMAVAKSVEPGSKNRQCIAYIESKGRQCVRWANDGDVYCCVHLSSRFLGSSSKAEKPVPVDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAETEQISSLPQNILKRKHEENYTGSEDMFCKDLVLVDVEGPLQVDPVSSIAGDTLHGESNLSEKLVHSENDHSVMEALNCIGSPPYDNRNPCTEAPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKWALAEASKDTSVGEFFTKLVHREKARIKLMWGFNDDIDLSSVMEEQPLLPSTINDSFDNENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNAEQLWQHVLSVHPVDFKPSKAPEQQTLSTGEDSPVKHDQGNSASLENNSENAGGSRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYKLKSGRLSRPRFKKGLAAVSYRMRNKANANLKRCIQATNSLGGEGKTVQPQLTETTNISGLTEHQCSAVAKILFSEIQKTKPRPNNLDVISIARSACCRISLAASLEEKYGILPKKLYLKAAKLCSEHNIVVNWHQEGFVCPRGCNMLKDQALLSPLASLPNGSVMPKSVNISDPASDEWEVDEFHCIISSPSLKFGSLQKAIVLCDDISFGKESVPVICVVDQELLHSLHTQRSNEQDLDSSKPWESFTYITKPMLDQSLSLDSESLQLGCACSYSTCCPETCDHVYLFGNDYVDAKDIFGKPMRGRFPYDENGRMILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWALRAGEAILRGTFVCEYIGEVLDVQEAHNRHKRYGTGNCSYFYDINARVNDMSRLIEGQAQYVIDATKYGNVSRFINHSCSSNLVSHQVLIESMDCERTHIGLYASRDISLGEELTYDYQYELVPGEGYPCLCESSKCRGRLY 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi161g00043 1474 Gene3D SET domain 1162 1455 IPR046341 -
Sebi161g00043 1474 ProSiteProfiles SET domain profile. 1319 1451 IPR001214 GO:0005515
Sebi161g00043 1474 Pfam SET domain 1330 1450 IPR001214 GO:0005515
Sebi161g00043 1474 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 729 - -
Sebi161g00043 1474 MobiDBLite consensus disorder prediction 890 921 - -
Sebi161g00043 1474 Pfam Pre-SET motif 1179 1311 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi161g00043 1474 Pfam Zinc finger C2H2-type, 3 repeats 826 951 IPR040689 -
Sebi161g00043 1474 ProSiteProfiles Zinc finger C2H2 type domain profile. 927 955 IPR013087 -
Sebi161g00043 1474 SMART preset_2 1176 1303 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi161g00043 1474 ProSitePatterns Zinc finger C2H2 type domain signature. 929 950 IPR013087 -
Sebi161g00043 1474 Gene3D Classic Zinc Finger 784 854 - -
Sebi161g00043 1474 SMART set_7 1319 1457 IPR001214 GO:0005515
Sebi161g00043 1474 MobiDBLite consensus disorder prediction 888 921 - -
Sebi161g00043 1474 ProSiteProfiles Pre-SET domain profile. 1240 1316 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi161g00043 1474 ProSiteProfiles Zinc finger C2H2 type domain profile. 824 847 IPR013087 -
Sebi161g00043 1474 ProSiteProfiles Post-SET domain profile. 1458 1474 IPR003616 -
Sebi161g00043 1474 SMART c2h2final6 858 881 IPR013087 -
Sebi161g00043 1474 SMART c2h2final6 824 847 IPR013087 -
Sebi161g00043 1474 SMART c2h2final6 927 950 IPR013087 -
Sebi161g00043 1474 SMART c2h2final6 790 813 IPR013087 -
Sebi161g00043 1474 ProSitePatterns Zinc finger C2H2 type domain signature. 860 881 IPR013087 -
Sebi161g00043 1474 ProSitePatterns Zinc finger C2H2 type domain signature. 792 813 IPR013087 -
Sebi161g00043 1474 SUPERFAMILY SET domain 1168 1464 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi161g00043 Sebi-Chr161 657117 667341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi161g00043 135 1473 C2H2 Transcription Factor Family AT2G23740 50.973 0.0 1358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi161g00043 Pre-SET 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi161g00043 - - gmx:100786757 2520.35