Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi161g00015 ATGGAGCTGAGCTTGGATTTGAGTTTGGCTTTTGTCCCCAAAACCGTTTCCCTCTTTCTTGGCGACGTTTCTCGGAGCAGAGACAACTCTGAGAAACTTGCCATGCTTGAGGACTTTATCCAGAGATTGGAGGATGAAATGAGGAAGGTTGAGGCTTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTTGTAAACGATGCCATAGCAAGATTGAAAGAGGAAAAACTACGGTGTATCGGAATGCAAGATCCACCTGTAACAGAGGAAGAATTCATGCCGCTGAAGACCAATTATGGAGGAAATGGAAAAGGACCTTCAATCATGGGAAAAGAAAGCTGTGACAAGAAGAATTGGATGAGCTCAGTTCAGCTATGGAACACTGAAACCAAATTGAAGGGTGGAGAAAGTGTTCAACAACTGGATCAGAAGAACGATAGTGGAGGAGCATTTATCTCATTTAATGGCAATTCATTTGTCCCTAAAGAGGTTTCGAAAGTTCCGAGCTTTAGTTTGATGAGTCCAGCTTCTGAACTAAGCCATAGCAATTCCAAGAGTGGTTGTGGAGGTAGTAGCTCTGGCTCTTCTTTGCTTCGCGTTGAGATACAGAGTCAACCACAACCACCGCAACATTTGCAGCAGAACCCGAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTCACAAATGATGAAGTGAAAAGCCACTTGCAAAAGTACAGGCTTCATATCAGAAGATTCCCAGTTGACCAGACTAATAATGGCTTATGGATGGCACAAGATCAATGTGTAGATAAATCAAAGGGGAACCTATCACAGTCTTGTTCTCCACAAGGTCCTCTTACGCCCCTTGTCTTGGGAGGGTCTGTTAAGGGTCTCTCAAGTCCTGGCCGAAACAGTATGGATGCAGAAGATGAGCAATCAGATTGCCGTAATTGGAAAGGTGGGATCCAGCAGCAACTAGAAGCTGATAATCAGAGCCTCTAA 1074 0.4562 MELSLDLSLAFVPKTVSLFLGDVSRSRDNSEKLAMLEDFIQRLEDEMRKVEAFKRELPLCMLLVNDAIARLKEEKLRCIGMQDPPVTEEEFMPLKTNYGGNGKGPSIMGKESCDKKNWMSSVQLWNTETKLKGGESVQQLDQKNDSGGAFISFNGNSFVPKEVSKVPSFSLMSPASELSHSNSKSGCGGSSSGSSLLRVEIQSQPQPPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHIRRFPVDQTNNGLWMAQDQCVDKSKGNLSQSCSPQGPLTPLVLGGSVKGLSSPGRNSMDAEDEQSDCRNWKGGIQQQLEADNQSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi161g00015 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 272 IPR006447 GO:0003677
Sebi161g00015 357 FunFam Myb family transcription factor 216 274 - -
Sebi161g00015 357 SUPERFAMILY Homeodomain-like 215 275 IPR009057 -
Sebi161g00015 357 Coils Coil 347 357 - -
Sebi161g00015 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 342 IPR044787 GO:0003700|GO:0006355
Sebi161g00015 357 MobiDBLite consensus disorder prediction 317 338 - -
Sebi161g00015 357 Gene3D - 216 273 - -
Sebi161g00015 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 274 IPR017930 -
Sebi161g00015 357 MobiDBLite consensus disorder prediction 173 194 - -
Sebi161g00015 357 Pfam Myb-like DNA-binding domain 219 270 IPR001005 -
Sebi161g00015 357 Coils Coil 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi161g00015 Sebi-Chr161 326907 328525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi161g00015 1 267 G2-like Transcription Factor Family AT4G37180 40.357 1.51e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi161g00015 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi161g00015 - - pvu:PHAVU_002G021400g 470.7