Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi160g00051 ATGACAGAGCCAATGACTACAAGAGCGGAGCACGGTGCACCACCGCAATCAACATTTCACGTCCTCTCGTTGCTTGGTTCACCATCCCGTTCATCGCCTCCGGTTTCCATCCTCTTCTTCACGGCCTCCGGTTCGCCGCCTCTCGTTCACGGCCTCCCCTTTGCGACATACAACACTGAACGACGAAACTCCTCTCTCTCCCTCTCACCCTCTTCCTCGAGCGGTAGCAACGAAGGAGTGGTGGCTACTGACTTGCTGCTGCTGGTGGTGGCGACTAGGGTTTTGCTTTTCTCCTTACTCGGTCTTCAATTCTTACTCTCTAGGGTTTTCTTCATCCCTTTCGATTCCCATTTCGACCTCGATCGAGAGGGGCCGCGGCTGGTGGCGCGAAGAGGGGTGTGCAGAGGAACCAGGGGGACCCCGAAGGCTGCACAGAACCAGCAGCACCCTGAAGTTGCGGAGGAGAAGCAGGTTATTGAGGAGGAGGAACACAAGGCGGCGGAAGAGAACCCTGTCGTTGAGGAGAAACCTGTTGTTGAAGAGAAACCTGTTGAGGACAAGGCTATTGATATGAACCAAATGGCTCCAGAGGCTGTAGAAGAAGCTACTCAGTGTCTAATGGTTTACCCATGGCGAAAAATATCCTCTCATCCTTGTGTTTACTATGTATCTAAAGCTTTTAATTATGTTTTCATGCTCGCATCTAATTTCTTCCTTGAAGGAAACGTGCTAGCAAATAGCAAGAGTGTTATGTTTAGTGCTATCATGGAAATAGTTTCAACCAGGAATGACGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACGCCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAAGAGTATGTTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGTTCATGAGGTGGAAGAGGAGGGTGAGGAAGATGATGAGCATGCTGGTGAGGAGCATGAGCATGTGGAGTTGGCTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAACGGAAAGAATTTGAAACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTATGGAACAAGCAAAACGAGCTGTATCAGAGCTCAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATAGTAATGATGAAGGAATGAACCGTGGATTTGCGTTTTTGGAATTTTCCTCTCGTTCAGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCAGGGGATGAAATAATGTCACAGGTTAAAACTGTATTTATTGATGCACTGCCTCCTTCATGGGATGAAGATTATGTTCGGGACATTCTTAAGAAATTTGGGGGATTGAAAAAGGTTGAACTGCCAGGAATATGCCAGCTGCTCGCAGGAAGGACTATGGATTTGTTACCTTTGGCACACATGATGCTGCTCTTCTTTCAGGCAAAAGTAAGGGCTAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACATGTTAGTCGTGGGGACTATCGTTCTGGTCGTGGATCTGGACTAATGACAAGGCCTTCATGGAGCCGACCTGCACCACGTAGCTTTCCTTCCCGTGGGGTAAGAGGAATTGTGAGTCGTGTTCCACCAGCCAGGCCTGTTAGTGTGAGAGATAGACGCCCTGTCATGTCCATGCCAGTAAGAAGTAGGCCACTGGCTCCTCCACCTAGATCTTATGATAGGAGACCGGCTGCTCCTGCATATCCAAAAAGTAGTGTGAAGAGAGATTATGGTCGGCGCGAGGATCTGCCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGTACATCTTACAGGGATTATCCAGCTCGTGGTCCTGGCTATTCTGAGCTCCCTAGAAGTACATCTCGTGCTGCACCAAGGAGAGGACGCCCCCGTGATTATGATGCTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATGGATGATGTTCCTCCGCGATACGCGGATGCTGGTGTTCGCCAATCAAGAGCTCGATTGGAATATGACTATGGTGGTAGTGCCTCACAGTATGGGGATACTTATGGTGATAGACTTGGAAGATCTAGTCTTGGATATGGTGGTGGCAGCAGAAGTTCTATTTCAGTCAAGATTCACATGGGATGCTCTTTTGGTGGTAGTGATGTTGGTGGCATGTACTCATCAAGTTACAGTGGTGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCGTATTCATCAATGTATTCTGGCAGGGGTGTGGGTGGTAGTAGCAGTTACATGGGTAGTGGTGGATCAGGATCTTATTATTGA 2559 0.4701 MTEPMTTRAEHGAPPQSTFHVLSLLGSPSRSSPPVSILFFTASGSPPLVHGLPFATYNTERRNSSLSLSPSSSSGSNEGVVATDLLLLVVATRVLLFSLLGLQFLLSRVFFIPFDSHFDLDREGPRLVARRGVCRGTRGTPKAAQNQQHPEVAEEKQVIEEEEHKAAEENPVVEEKPVVEEKPVEDKAIDMNQMAPEAVEEATQCLMVYPWRKISSHPCVYYVSKAFNYVFMLASNFFLEGNVLANSKSVMFSAIMEIVSTRNDDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYVGVDYDEKEIEQDEVHEVEEEGEEDDEHAGEEHEHVELADVEEEEHREVVKERRKRKEFETKKNKGFAFLRFETMEQAKRAVSELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDSNDEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRDILKKFGGLKKVELPGICQLLAGRTMDLLPLAHMMLLFFQAKVRARLSRPLQRGRGKHVSRGDYRSGRGSGLMTRPSWSRPAPRSFPSRGVRGIVSRVPPARPVSVRDRRPVMSMPVRSRPLAPPPRSYDRRPAAPAYPKSSVKRDYGRREDLPPPRSRVAADYGSRVASERRTSYRDYPARGPGYSELPRSTSRAAPRRGRPRDYDALSGSKRSYAAMDDVPPRYADAGVRQSRARLEYDYGGSASQYGDTYGDRLGRSSLGYGGGSRSSISVKIHMGCSFGGSDVGGMYSSSYSGGGDYISRGSDVGGSSYSSMYSGRGVGGSSSYMGSGGSGSYY 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi160g00051 852 Gene3D - 334 400 IPR012677 -
Sebi160g00051 852 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 356 852 - -
Sebi160g00051 852 SUPERFAMILY RNA-binding domain, RBD 351 398 IPR035979 GO:0003676
Sebi160g00051 852 MobiDBLite consensus disorder prediction 309 324 - -
Sebi160g00051 852 MobiDBLite consensus disorder prediction 632 646 - -
Sebi160g00051 852 FunFam Heterogeneous nuclear ribonucleoprotein Q 400 483 - -
Sebi160g00051 852 Gene3D - 401 483 IPR012677 -
Sebi160g00051 852 CDD RRM_SF 357 393 - -
Sebi160g00051 852 MobiDBLite consensus disorder prediction 136 179 - -
Sebi160g00051 852 MobiDBLite consensus disorder prediction 153 179 - -
Sebi160g00051 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 398 IPR000504 GO:0003723
Sebi160g00051 852 MobiDBLite consensus disorder prediction 309 343 - -
Sebi160g00051 852 SUPERFAMILY RNA-binding domain, RBD 399 529 IPR035979 GO:0003676
Sebi160g00051 852 CDD RRM_SF 499 529 - -
Sebi160g00051 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 484 IPR000504 GO:0003723
Sebi160g00051 852 MobiDBLite consensus disorder prediction 564 727 - -
Sebi160g00051 852 CDD RRM_SF 402 469 - -
Sebi160g00051 852 SMART rrm1_1 401 480 IPR000504 GO:0003723
Sebi160g00051 852 SMART rrm1_1 253 394 IPR000504 GO:0003723
Sebi160g00051 852 MobiDBLite consensus disorder prediction 325 343 - -
Sebi160g00051 852 MobiDBLite consensus disorder prediction 657 671 - -
Sebi160g00051 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 402 468 IPR000504 GO:0003723
Sebi160g00051 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 390 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi160g00051 Sebi-Chr160 997598 1004159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi160g00051 356 523 Eukaryotic Initiation Factors Gene Family AT3G16380 26.042 3.13e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi160g00051 - - gmx:100779340 716.072