Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi160g00036 ATGGCCGATGCTGGATCTGAAGTTGAAGTGGAAATGGAAGAAAAATCATGGCATCTTTTGGCAACTTTGCTTCGAATCGGCCACCCTGTATACCCTGAACACCTCGCTTCGCGATGTCAATTGTTCACCGCATCACCAGAATTCGTTCTCTACGTTACCTCTCTCCCTGCTTCTCCTCTCTCCGTTACGGATAACGGACTCGTTACTCCCTCCGCCACGGCCGTTTTCGCTCTGGCTAGGTTTTTTCTCCCTCCGATTCCCCGATTCACAACCGTGCCGGCTCAGGAAACGGAAGTTGCTTTTCTCATCCGCCGATGGTTAAATAAACAAACCCTTAAACATCCTTGCATCGGTTATAGTTTTGGTGATGCTTCCAAGGCTATGATGAGAAGGAATTTCCCTGAAATAAAATTTGAATCGCTGGTTATGCACGGTGGGAATGCTATAATCCCATTGCGTATTGATACACTTGGAGATGGAGAGTGTTCAAGTTGTCCAGCGCCAAAATTTGGACATAGGGAAGTTGATAATAATGCCATCACAAGCATGTCTCGAGGAGGGATTTCTGGATCTGTGATTAAAGCTAGTGATAGTTTGCTCATGACTGGAAGTGACTTAACTTTTCGGAAGCTAGTAGGTATAGATAGATTCATGGAATGTAATCTCTTTGTAAACCGTTCTCTGTCAACTAGTTTTCAAGATCCCTCGCTACATAATGAGGGTGTTGTTGGTGGCAATATCATTGAGTTTGGGAAGAAAATGGATTACTTTGATACATTTAGGCATGAATATCCTGGACAGAACATTGTTCATCCTGGTAGTGGTATTTGTGAAAGTAATACTTGCAAAGATCCAGTAAGAGAATCTGATGAAAATGAAGAAGTGGAAAGTGGTTCAAAGAAAGGGTTCATTGGTTTTGGAACGGATAAAGAGAAGGAAGATGCTGCTCAGATGGTCAAACCTGAACTATGTGTTGAAGAACTGACTAAAGATTTGGAACCAGAAAACTGCATCCATGTGTTGAATTTGGACAAAAATGAGACACTGAGAAATATCGGGACTCAGTCTTCCAATAAAATAGCTCTGTCCTCTTCAAATCCAAAGCAGCTGCTGAAATCATCCTCCATAGTGAAGGGAGGACAGAAGAACGATATACACTTAAAGACACAAATTCTCACGGAATCACTAGCCTGTAATAAGTTTGAAAATGCTGATCACTGTAAAAATGATCAGAAATTTATTACGAAACACAAACTAAAGCAAAGTCGTAAAGAAAACATGGCAGAGACAGAAAGTATCTCCATGACCCAGAAGGTGGAGAAAAAAGTATATCCATCTTTTCAATCTTTTACAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACCGTTTACCGCGCTCGAAGAACTGCAGATGGAAAAAGACTTGCAATAAAATGTCCTCATAATAATGCTCATAAAAATCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAAAAATTTCATAATAAAGTTTGAAGGTTCTTTCAAAAGTGACAGTAGTACTAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGACCTGAGGTTTTGAAAAAGGAAATTGATATAATTCAGCTTCAGTGGTATGGGTATTGCATGTTCAGGGCCCTTGCGTGCTTGCACAAAGAGGGAGTCGTTCACAGAGATGTTAAACCTGGAAACTTCCTTTTTTCGCGAAAGCTAAACAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAACATTGGAAGTAAATCAAAACCAAGCCTTGATGGATCCAATAAAATTCCTCTCCCTTCTGGTTCTGCCCCTGTGGCCCAAGACAAAAGCCTTGGAGGAAGCAAGTCTTTAACATTCAACAAAAGGGACTCGGCAGATTATAGGAAATTTTCTGACCTTAATAGACATGTAAAGGAAAAGGCTTATGCTGGTCATCTAAAAAATTGTCCTGATCAGGCTGGTGGGAGTTTACTTAGAGCACAAGGAACGGATGGCTCCGGTATAACCTCTGCGAGAGATGTTACTAGCACTAGGACTGCTTCTGCAGAAAGGCTTAGGGAACCGTTACCTTTTCGAGGAAGAAAGGAGCTTATCAGCCTTGTGCAGAATTCTATGCAATGTGCGAATACTAGTTCAATAAAAGGTCCTTCTTCTCAAAGGAAAAGGGTTACTGCTCCTTCAGGCAAGGTAGATGGCAAGATTGCATATCTTACTCCGATGCCTCTACATTCATCTACAGTTGCTGCAGCATTATTAAGAAGCAAAGGAGATGGAAAACATAAAAGAGAGGGTTCGTGTGTTGGAACCAAGGGATTCCGTGCTCCAGAGGTTTTGCTTAGGTCTCAGTTTCAGGGACCTAAGGTTGATATTTGGTCGGCCGGAGTCACTCTACTATACATGGTGATTGGGAAAACTCCTTTCACTGGCGAACCAGAACAGAATATAAAAGACATTGCCAAATTGCGGGGCAGTGAAGAGCTTTGGGAAGTGGCCAAGCTACATGACCGTGAATCATCTTTTCCAGTGGAATTACTTGATGACCGGTACTTGCAATCATGGGACATAGAAAGTTGGTGCAAGATTCACACAAAGAGACCAGAGTTTCTTGAGCATGCCCCGAAATCATTATTTGATTTATTAGACAAGTGTCTAACAGTAAATCCAAGAAGTAGGATTAGCGTTGAAGAAGTTCTTAGGCATGAATTCTTTGCTTCATGTAATGAGCTCATGAGGAAGCAAAGGATGATTCGACGAGGTCTCAGCTCGGACACTGCAGCTTCTGGAACAATCTGA 2847 0.4176 MADAGSEVEVEMEEKSWHLLATLLRIGHPVYPEHLASRCQLFTASPEFVLYVTSLPASPLSVTDNGLVTPSATAVFALARFFLPPIPRFTTVPAQETEVAFLIRRWLNKQTLKHPCIGYSFGDASKAMMRRNFPEIKFESLVMHGGNAIIPLRIDTLGDGECSSCPAPKFGHREVDNNAITSMSRGGISGSVIKASDSLLMTGSDLTFRKLVGIDRFMECNLFVNRSLSTSFQDPSLHNEGVVGGNIIEFGKKMDYFDTFRHEYPGQNIVHPGSGICESNTCKDPVRESDENEEVESGSKKGFIGFGTDKEKEDAAQMVKPELCVEELTKDLEPENCIHVLNLDKNETLRNIGTQSSNKIALSSSNPKQLLKSSSIVKGGQKNDIHLKTQILTESLACNKFENADHCKNDQKFITKHKLKQSRKENMAETESISMTQKVEKKVYPSFQSFTIEEEEGSGGYGTVYRARRTADGKRLAIKCPHNNAHKNHVNNERNMLERFGGKNFIIKFEGSFKSDSSTSDCFVLEHVEHDRPEVLKKEIDIIQLQWYGYCMFRALACLHKEGVVHRDVKPGNFLFSRKLNKGYLIDFNLAMDLKQKYNIGSKSKPSLDGSNKIPLPSGSAPVAQDKSLGGSKSLTFNKRDSADYRKFSDLNRHVKEKAYAGHLKNCPDQAGGSLLRAQGTDGSGITSARDVTSTRTASAERLREPLPFRGRKELISLVQNSMQCANTSSIKGPSSQRKRVTAPSGKVDGKIAYLTPMPLHSSTVAAALLRSKGDGKHKREGSCVGTKGFRAPEVLLRSQFQGPKVDIWSAGVTLLYMVIGKTPFTGEPEQNIKDIAKLRGSEELWEVAKLHDRESSFPVELLDDRYLQSWDIESWCKIHTKRPEFLEHAPKSLFDLLDKCLTVNPRSRISVEEVLRHEFFASCNELMRKQRMIRRGLSSDTAASGTI 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi160g00036 948 SMART serkin_6 450 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi160g00036 948 Gene3D Transferase(Phosphotransferase) domain 1 763 942 - -
Sebi160g00036 948 Pfam Protein kinase domain 452 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi160g00036 948 Pfam Protein kinase domain 781 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi160g00036 948 Gene3D Transferase(Phosphotransferase) domain 1 528 596 - -
Sebi160g00036 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 564 576 IPR008271 GO:0004672|GO:0006468
Sebi160g00036 948 FunFam Kinase like protein 760 932 - -
Sebi160g00036 948 FunFam Probable serine/threonine-protein kinase DDB_G0291918 442 609 - -
Sebi160g00036 948 MobiDBLite consensus disorder prediction 680 700 - -
Sebi160g00036 948 Gene3D Phosphorylase Kinase; domain 1 451 527 - -
Sebi160g00036 948 SUPERFAMILY Protein kinase-like (PK-like) 433 925 IPR011009 -
Sebi160g00036 948 MobiDBLite consensus disorder prediction 602 635 - -
Sebi160g00036 948 ProSiteProfiles Protein kinase domain profile. 450 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi160g00036 948 MobiDBLite consensus disorder prediction 678 706 - -
Sebi160g00036 948 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 387 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi160g00036 Sebi-Chr160 674885 681425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi160g00036 785 921 Core Cell Cycle Gene Families AT3G48750 31.944 2.02e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Sebi160g00036 Pkinase 1.2e-19 CL0016