Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi160g00018 ATGATGGACACTCACGCTGGAAACACCAATGTGAATGCCGTTGATCACTTTGAAACCGTCGCAACGTCGTCGTTTCAGGACGCTCCAGCTCCATCAGCGTTCTCCCGGAGTTCGAGCTTCCGGAGCATTTTCTTGGCGGAGAACTGGGCGGAGCTGCCATTGAAGGAGGACGACGCCGACGACATGGTCATCTATGGAGCCTTGCGCGAGGCCGCCACCATAGGGTGGTTCCCTGCCAACAACAAGGTTGACACCGCGGTGAAAGTGGAAAATGAGGGTGAAAACAGTGGCACTGTGGTGGCACGTGAGGTACACGCGCCGTCAAGGAAGGGGTTGGGGTACCGTGGTGTGAGGAGGAGGCCCTGGGGGAAGTATGCGGCTGAAATAAGGGACCCTAAGAGGAATGGCGCCAGGGTGTGGCTTGGGACATATGAAACGGCTGAGGATGCAGCTTTGGCTTATGATCGAGCTGCGTTTGAGATGCGCGGCTCGAAAGCCAAGTTGAATTTCCCTCACTTAATCGGCTCGGAATACAGTGGGCCCATTAGACACACGCGGGGTACATCTTTGCCGTGA 576 0.5625 MMDTHAGNTNVNAVDHFETVATSSFQDAPAPSAFSRSSSFRSIFLAENWAELPLKEDDADDMVIYGALREAATIGWFPANNKVDTAVKVENEGENSGTVVAREVHAPSRKGLGYRGVRRRPWGKYAAEIRDPKRNGARVWLGTYETAEDAALAYDRAAFEMRGSKAKLNFPHLIGSEYSGPIRHTRGTSLP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi160g00018 191 CDD AP2 114 173 IPR001471 GO:0003700|GO:0006355
Sebi160g00018 191 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Sebi160g00018 191 FunFam Ethylene-responsive transcription factor 2 112 172 - -
Sebi160g00018 191 PANTHER DNA-BINDING DOMAIN 86 172 IPR044808 GO:0003700|GO:0009873
Sebi160g00018 191 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Sebi160g00018 191 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Sebi160g00018 191 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Sebi160g00018 191 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Sebi160g00018 191 SUPERFAMILY DNA-binding domain 113 172 IPR016177 GO:0003677
Sebi160g00018 191 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi160g00018 Sebi-Chr160 230360 230935 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi160g00018 34 183 AP2-EREBP Transcription Factor Family AT2G44840 58.667 1.22e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi160g00018 AP2 8.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi160g00018 K09286 - gmx:100793366 254.603